Gene Information

Name : PFL_3483 (PFL_3483)
Accession : YP_260586.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4005090 - 4005599 bp
Length : 510 bp
Strand : +
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
ATGGTGCCCAACCCTTCGCTACAGCACGCCGTGGGCGAGCTCTACCTCCAGCATCACAACTGGGTGGTGCAACTGCTGCG
ACGCAAGCTCGGCAACCAGGACCAGGCCATGGACCTGGCGCAGGACACCTTTGTGCGCATCTTGCGCAGCGAGCGACTGC
CGGTACTGCGCGAACCCCGGGCCTACCTCAACACCGTGGCCAGCCGCCTGTGCGGGCAGTATTTCCGGCGCCAGGCCCTG
GAGCGCGCCTACCTGGAAACCCTGGCGCAGCTGGAGCCGCAGTACCAGCCCTCGCCGGAAACCCGGCTGCTGGTGCTTGA
GGCCCTGGACGCCGTGGGCCAGGTGCTGGACGGCCTGGGCAGCCGGGTGCGCGAGGTGTTTCTGCTGTCCCAGCTCGAAG
GCCTGACCTACCCGCAAATTGCCCAACGCCTGCAGCTCTCGGTCAACGTGGTGCAGAAAGCCATGCTCAAGGCCTACCGC
CACTGCTACGCGGCGGTGTACCCGGGATGA

Protein sequence : 
MVPNPSLQHAVGELYLQHHNWVVQLLRRKLGNQDQAMDLAQDTFVRILRSERLPVLREPRAYLNTVASRLCGQYFRRQAL
ERAYLETLAQLEPQYQPSPETRLLVLEALDAVGQVLDGLGSRVREVFLLSQLEGLTYPQIAQRLQLSVNVVQKAMLKAYR
HCYAAVYPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-30 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3483 YP_260586.1 ECF family RNA polymerase sigma factor VFG1049 Protein 1e-30 49