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Name : secD (PFL_4972) Accession : YP_262052.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 5723787 - 5725655 bp Length : 1869 bp Strand : - Note : identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 DNA sequence : ATGCTGAACAAATATCCTCTGTGGAAGTACCTACTGATCCTGGCGGTGCTGGCGATCGGTTTTATTTATTCCGCTCCCAA TCTATACCCTGATGATCCGGCCATTCAGGTCAGCGGCGCGAGTACCGCGTTGCAGGTCACTCAGGCGGATCTGGATCGTG CGAGCAAAGCGCTCACCGACGCCGGCATCAACGTCAAGGCTTCTTCCATTGCCGCCAACGGCAAGGGTGGCCTGCTGCGC TTGACCAACAAGGAAGACCAGCTTCCGGCCAAGGATGTAGTGCGCAAGGCGCTGGGCGATGACTATGTGGTGGCGTTGAA CCTGGCGCAAACCACTCCGCAATGGCTGCGCAACCTCGGTGCGCACCCGATGAAACTGGGTCTGGACTTGTCCGGTGGTG TGCACTTCCTGCTGGAAGTGGACATGGACAAAGCCCTCGACGCCCGCCTGAAAGTCTACGAAGGCGATGTCAAGAGCCTG CTGCGCAAAGAGCGCCTGCGCTATCGCAGCCTGCCGCAGCTCAATGGCGCCATCCAGCTGGGCTTCAGCGATGAAGACAG CCGTGAGCAGGCCCGTTCGCTGATCCGCAAGAACTTCAATGATTTCGATATCGTACCGGCCGACCTCAATGGTCAACCGG TGCTGCGTCTGGCGATGACCCCAGCCAAGCTGGCGGAAATCCGCGAATACTCCATCAAGCAGAACTTGACCACCGTGCGT AACCGGGTCAACGAGCTGGGTGTGGCCGAGCCTCTGGTTCAGCGCCAGGGTGCCAACCGTATCGTGGTTGAGCTGCCGGG CGTGCAGGACACCGCTGAAGCCAAGCGGATCCTGGGCAAGACCGCCAACCTGGAGTTCCGTCTGGCCGCCGAGCCGGGTG CTTCCAAGGCGACTTCCGAGTCCTTCGAATTCCGTGAGGGCAATCGTCCTCCAGCGCAGATCGAGCGTGGCCTGATCATC ACCGGTGACCAGGTGACCGATGCCCAGGCTGGTTACGACGAGCATGGCCGCCCACAGGTGAACATCAAGCTTGATGGCCA CGGTGGCGAGCTGATGAACCGTTCGACCCGCAGCAACGTCGGCCGCAGCATGGCGGTGATCTTCATCGAGCAGAAGCCGA TCACCACCTATACCAAGCAGGTGGTCGACGGCGTCGAGAAGGACGTGCCGGTCCAGGCGTTCAAGGAAGAGAAGAAGATC ATCAGCCTGGCGACCATCCAGTCGCCGCTGGGCAGTCAATTCCGTATCACTGGCCTCAATGGCCAGGGCGAATCCTCCGA ACTGGCGCTGCTGTTGCGTGCCGGTGGTCTGGCGGCGCCGATGTACTTCGCTGAAGAGCGCACAATCGGTCCGAGCCTGG GTGCTGACAACATCACCAAGGGTATCGATGCGTCGCTGTGGGGCATGCTGTTCGTGTCGCTGTTCATCATCGCCATCTAC CGCTTCTTCGGGGTGATCGCCACTGTGGCGCTGGCCTTGAACATGGTGTTGCTGCTGGCCCTGATGTCCCTGCTGGGGGC TACGCTGACCCTGCCGGGTATCGCCGGTATCGTGCTGACCATGGGCATGGCGGTGGACGCCAACGTGCTGATCTTCTCGC GGATACGTGAAGAGATCGCCGCCGGCATGACCGTGCAGCGAGCAATCAACGAAGGCTTCGGCCGGGCATTCACCGCGATT CTGGACTCCAACCTGACCACATTGCTGGTGGGTGGCATCCTCTTTGCCATGGGCACCGGCCCGGTCAAGGGCTTTGCGGT GACCATGTCCCTCGGGATCTTTACCTCGATGTTCACGGCCATCTGGCTGACCCGCGCGATGGTCAACCTGATCTTCGGCG GTCGTGACTTCAAGAAGTTGTGGATTTAA Protein sequence : MLNKYPLWKYLLILAVLAIGFIYSAPNLYPDDPAIQVSGASTALQVTQADLDRASKALTDAGINVKASSIAANGKGGLLR LTNKEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL LRKERLRYRSLPQLNGAIQLGFSDEDSREQARSLIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSESFEFREGNRPPAQIERGLII TGDQVTDAQAGYDEHGRPQVNIKLDGHGGELMNRSTRSNVGRSMAVIFIEQKPITTYTKQVVDGVEKDVPVQAFKEEKKI ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY RFFGVIATVALALNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAI LDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIWLTRAMVNLIFGGRDFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
