Gene Information

Name : PFL_5704 (PFL_5704)
Accession : YP_262762.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 6502427 - 6502945 bp
Length : 519 bp
Strand : +
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
TTGTCGTCAGTCCAAAGCCCTCACAATGAGCTGGTTGGTGCGTTGTATCGCGACCATCGTGGTTGGCTGTTGGCCTGGCT
ACGGCGCAACGTTGCCTGCAGCCAGCGGGCCGAGGACCTGAGCCAGGACACCTTCGTGCGCCTGCTGGGCCGCGACGAAC
TCAAGGCGCCCCGGGAGCCCCGGGCGTTTCTGGTGGCCATCGCCAAGGGCCTGCTGTTCGACTATTTCCGGCGCGCCGCA
CTGGAACAGGCTTACCTCAGCGAACTGATGCTGATCCCCGAAGGCGAACAACCGTCGCCCGAAGAACAGCAGATGATCCT
CGAAGACCTCAAGGCCATCGACCGCCTGCTGGGCAAGCTCTCCAGCAAGGCGCGCATGGCCTTCCTCTATAACCGCCTCG
ACGGCCTGAGCCACGCCGAGATCGCCGAACGCCTGGGGGTCTCGGTGCCAAGGGTGCGCCAATACCTGGCCCAGGGCATC
CGCCAGTGCTACATCGCCCTGTACGGGGAGCCGCTATGA

Protein sequence : 
MSSVQSPHNELVGALYRDHRGWLLAWLRRNVACSQRAEDLSQDTFVRLLGRDELKAPREPRAFLVAIAKGLLFDYFRRAA
LEQAYLSELMLIPEGEQPSPEEQQMILEDLKAIDRLLGKLSSKARMAFLYNRLDGLSHAEIAERLGVSVPRVRQYLAQGI
RQCYIALYGEPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-29 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_5704 YP_262762.1 RNA polymerase sigma factor VFG1049 Protein 2e-29 48