Gene Information

Name : fecI (PFL_0984)
Accession : YP_258115.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1126516 - 1127004 bp
Length : 489 bp
Strand : -
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
TTGTCCCACACCGCTACCGTCGAAGGCCTCTACCAGGCCCATCACAGCTGGTTGAACACCTGGTTGCGGCGCCGGCTCGG
CTGCCCCCACAGCGCCGCAGACCTGGCCCAGGACACCTTCATCCGGGTACTCAGCGCCCGGGAAACACCGGCCCTGATCG
AGCCCCGGGCGTTTCTCACCACCATCGCCAAGCGCGTGCTGTTCAACCACTACCGGCGCCAGGACCTGGAGCGGGCCTAT
CAGGAAACCCTGGCGCAGATGCCTGAACAGGTGGCGCCCTCCGAGGAAGAGCGGGCCATCATCCTGCAAACCCTGATGGA
GCTGGACAGCCTGCTCGACGGCCTGCCGCGGCCGGTCAAGCGAGCCTTTCTGCTGTGCCAGCTGGACGGCCTGACCTACG
GCGAAATCGCCCGGGAGCTGAATATCTCCATCGCCACGGTCAAACGCCACCTGAACAAAGCGGCGATGCGCTGCTACTTC
GCCCTGTGA

Protein sequence : 
MSHTATVEGLYQAHHSWLNTWLRRRLGCPHSAADLAQDTFIRVLSARETPALIEPRAFLTTIAKRVLFNHYRRQDLERAY
QETLAQMPEQVAPSEEERAIILQTLMELDSLLDGLPRPVKRAFLLCQLDGLTYGEIARELNISIATVKRHLNKAAMRCYF
AL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-37 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fecI YP_258115.1 RNA polymerase sigma factor VFG1049 Protein 2e-37 53