|
Name : rpoB (WGLp522) Accession : NP_871525.1 Strain : Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Genome accession: NC_004344 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 599101 - 603129 bp Length : 4029 bp Strand : + Note : Transcription DNA sequence : ATGGTTTATTCTTATACGGAAAGAAAAAGAATTAGGAAAGACTTTGGAAAACGTCCGCAAGTTTTAGATATACCATATTT ACTTGCTATACAAATTAATTCATTTAAAAAATTTATAGAAAAAGATCCAGAAGGTTTGTATGGATTAGAAGCAGCATTTA AATCCATTTTTCCTATTAAAAGTTATAGTGGAAATGCAGAATTAAAATATATAAGTTATAGACTTGGATGTTCTGTTTTT AATGTAAAAGAATGCCAAACAAGAGGAACAACTTTTTCTGCTCCTTTAAGAGTAATATTACAATTAATAATTTATTGCGA TGAATCAAAACATGTTGTAAAAAATATTAAAGAACAAGAAGTATATATGGGAGAAATTCCATTAATGACAGATAATGGAA CATTTATAATAAATGGAACAGAAAGAGTTGTAGTTTCTCAATTGCATCGTAGTCCAGGTGTATTTTTTGACAGTGATAAG GGTAAAACCCACTCTTCTGGAAAGGTATTGTATAATGCAAGAATTATCCCATATAGAGGATCTTGGTTAGATTTTGAATT TGATGCAAAAGATCATTTATTTATTAGAATTGATAGAAGAAGAAAATTACCTGTAACAGTTCTTTTAAAAGCGTTAAATT TTAGTGATGGTGAAATTTTAAATATATTTTTTGAAAAGGTTAATTTTTTTATTAGAAAAAAAAATTTATTAATGGAATTG ATACCAAAAAGATTAAGAGGAGAAACAGCTCTATTTGATATATGTGAAAATGGAATAACATATATAAAAAAGGGTCGTAG AATAACTGCAAAACATATTAGAAATCTAGAAAATGATAAAATATCTCAAATAACAGTTCCATTTGAATATATTATAGGAA AAGTTTCTGCTAAAAATTATTTTGACAAAAAAACAGAAAAACCAATTATTACAGCGAATACAGAACTTACTGTAGACTTA ATGCTTAATTTATTTAAATCTGGATATAAAAGCATCGAGACTTTGTTTACAAATGATTTAGATCATGGATCATATATCTC AGAAACATTAAGAATTGATTCTACTACAGATAAAACTAGTGCTTTAATAGAAATATATCGTATGATGAGACCAGGAGAGC CTCCTACTAAAGAGGCTGCAGAAAATTTATTTTATAATTTATTCTTCTCAGAAGATAGATATGATTTGTCTTCTGTAGGA AGAATGAAATTTAACAAATCTTTATCAATAAATTCATCTGAAGGTTCAAGTTTATTGGATAAATTTGATATCATAGAAGT AACAAAAAAATTGATAGATATAAGAAATGGTAAAGGAGACGTAGATGACATTGATCATCTAGGAAATAGAAGAATTAGAT CAGTAGGAGAGATGGCTGAGAATCAATTCAGAATAGGATTAGTTAGAGTGGAACGTGCAGTTAAAGAAAGGTTATCTTTA GGAGATCTAGATACAATAATGCCACAAGACATGATTAATGCTAAGCCCATTTCAGCTGCAGTAAAAGAATTCTTTGGATC TAGTCAATTGTCACAATTCATGGATCAAAATAATCCATTATCAGAAATTACTCATAAACGTCGAATATCGGCTCTAGGTC CTGGAGGATTAACTAGAGAAAGAGCTGGTTTTGAAGTAAGAGATGTGCATCCTACACATTATGGTAGAGTATGTCCAATA GAAACTCCAGAAGGTCCAAATATTGGATTAATCAATTCTCTATCTGTTTATGCTAGAACAAATGAATATGGTTTTTTAGA AACTCCATACAGATGTGTTTTAAATGGAATAGTGACTAACAATATACATTATCTATCTGCGATAGAAGAAGGAAAATTTA TTATAGCTCAAGCAAATACTAACTTGGATAAAAATGGATATTTTATAAATGAATTTGTTACTTGTAGAAACAAAGGAGAA TCAAGTTTATTCAACAGAAATCAAGTAAATTATATGGATGTATCTACTCAACAAATAGTTTCAGTTGGAGCATCTTTAAT TCCTTTTTTAGAACATGATGATGCAAATAGAGCTTTAATGGGAGCTAATATGCAAAGACAAGCAGTTCCAACTTTAATGA CAGAAAAACCATTGATAGGAACTGGTATGGAAAGAGCAGTAGCAGTAGATTCTGGTGTAACTGCAGTAGCAAAAAGAGGG GGAATAGTTCAATTTTTAGATTCATCCAAAATAATAATAAAGGTCAACCAAGAAGAAATAATAAAAGAAAAAATAGGGAT AGATATTTACCATTTAACAAAATATGTTAGATCAAATCAAAATACATGCATAAATCAAACACCTTGTGTATGCTTAAATG ATGTAGTAGAACGTGGAGACGTTTTAGCAGACGGTCCATCTACTGATTTAGGAGAGCTAGCCTTAGGTCAAAATATGAGA ATAGCATTTATGCCGTGGAATGGATATAATTTTGAAGATTCTATGTTAGTTTCCGAAAAAGTTGTTCATGAAGATAGATT TACAACAATACATATTCAAGAATTAGCCTGTATGTCTAGAGATACCAAATTAGGATCAGAAGAAATAACCTCAGATATTC CAAATGTAAGTGAAACTTCTTTGTTGAAATTAGATGAATCTGGAATTGTTTATATTGGAGCAGAAGTAAAAGGAGGAGAT ATATTGGTAGGAAAAGTTACTCCTAAAGGCGAAACTCAATTAACTCCAGAAGAAAAATTATTACGAGCTATTTTTGGAGA AAAAGCTTCAGATGTAAAAGACTCATCATTAAGAGTCCCAAATGGAGTTTCAGGAACAGTTATAGATGTAGAAATATTCA CTAGAGATGGAGTTAAAAAAGATAAAAGAGCTTTAGAGATTGAGTATATGCAAATCAAAGAAGCAAAAAAAGATATATAT GAAGAACTAGAAATTTTTAAATCTAGCTTAAAAATACAAATAGAATATTTTCTAAAAGAAAACAATATAGAATATGATTC TCTGTCAGAATTATTAAAAGGAAATATAAAAAATTTAATATTTAAAAATAATAATTTAAATAATATATTTGAAGAACTAA TAAATAAATTTTTGAGATTAAAAGAAGAATTTGAAAAAAAATTAGAAATAAAAATAAAAAAAATTACTCAAGGAGACGAT TTAGCACCAGGAGTTTTAAAAATTGTTAAAGTTTACTTGGCCGTAAAACGGCAAATACAGCCAGGTGATAAAATGGCAGG ACGTCATGGAAACAAAGGAGTTATTTCTAAAATAAATCCAATAGAAGATATGCCTTATGATGAGAACGGAGTTCCTGTAG ACATGGTATTAAATCCTTTAGGAGTTCCTTCTAGAATGAATATTGGACAAATTTTAGAGACTCATTTAGGACTAGCTGCA AAAGGAATAGGAAATATTATAGATAATATGTTAAAAAATAACAAAAAAATTTATAAAATAAAAAAATTTATACAAAATGC ATATAATTTAGGGATTGGAATTAGGCAAAAGGTTGAATTAGATCATTTTTCTGATAAAGAAATTATTAAACTTGCAAATA ATCTTAGAAAAGGAATGCCTATAGCTACTCCTGTATTTGATGGAGCTCAAGAAATAGAAATAAAAGAACTTTTGAAATTT AGTGGAAATCCTGAATCTGGTCAAATTACATTATTTGATGGACAAACAGGTGAAAAGTTTGATAGACCAGTTACTGTAGG ATATATGTATATGTTAAAATTAAATCATTTGGTTGACGATAAAATGCATGCTAGATCTACTGGATCTTATAGCTTAGTAA CCCAACAACCATTGGGTGGAAAAGCCCAGTTTGGAGGGCAAAGATTTGGAGAAATGGAAGTATGGGCTTTAGAAGCATAT GGAGCTGCTTATTCTTTACAAGAAATGCTTACAGTAAAATCAGATGACGTTAATGGGCGTACTAAGATGTATAAAAATAT AGTAGATGGCAGCCATTTAATGGAACCTGGAATGCCAGAATCTTTTAATGTACTTTTAAAAGAAATTCGTTCTTTAGGAA TTAATATTGAATTAGAAGAAAATAATTAA Protein sequence : MVYSYTERKRIRKDFGKRPQVLDIPYLLAIQINSFKKFIEKDPEGLYGLEAAFKSIFPIKSYSGNAELKYISYRLGCSVF NVKECQTRGTTFSAPLRVILQLIIYCDESKHVVKNIKEQEVYMGEIPLMTDNGTFIINGTERVVVSQLHRSPGVFFDSDK GKTHSSGKVLYNARIIPYRGSWLDFEFDAKDHLFIRIDRRRKLPVTVLLKALNFSDGEILNIFFEKVNFFIRKKNLLMEL IPKRLRGETALFDICENGITYIKKGRRITAKHIRNLENDKISQITVPFEYIIGKVSAKNYFDKKTEKPIITANTELTVDL MLNLFKSGYKSIETLFTNDLDHGSYISETLRIDSTTDKTSALIEIYRMMRPGEPPTKEAAENLFYNLFFSEDRYDLSSVG RMKFNKSLSINSSEGSSLLDKFDIIEVTKKLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLSL GDLDTIMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI ETPEGPNIGLINSLSVYARTNEYGFLETPYRCVLNGIVTNNIHYLSAIEEGKFIIAQANTNLDKNGYFINEFVTCRNKGE SSLFNRNQVNYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLMTEKPLIGTGMERAVAVDSGVTAVAKRG GIVQFLDSSKIIIKVNQEEIIKEKIGIDIYHLTKYVRSNQNTCINQTPCVCLNDVVERGDVLADGPSTDLGELALGQNMR IAFMPWNGYNFEDSMLVSEKVVHEDRFTTIHIQELACMSRDTKLGSEEITSDIPNVSETSLLKLDESGIVYIGAEVKGGD ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVEIFTRDGVKKDKRALEIEYMQIKEAKKDIY EELEIFKSSLKIQIEYFLKENNIEYDSLSELLKGNIKNLIFKNNNLNNIFEELINKFLRLKEEFEKKLEIKIKKITQGDD LAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGVPVDMVLNPLGVPSRMNIGQILETHLGLAA KGIGNIIDNMLKNNKKIYKIKKFIQNAYNLGIGIRQKVELDHFSDKEIIKLANNLRKGMPIATPVFDGAQEIEIKELLKF SGNPESGQITLFDGQTGEKFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY GAAYSLQEMLTVKSDDVNGRTKMYKNIVDGSHLMEPGMPESFNVLLKEIRSLGINIELEENN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_871525.1 | hypothetical protein | NC_002695.1.914942.p | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | CP001138.1.gene4362. | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | CP004022.1.gene2794. | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | CP001918.1.gene250.p | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | CP000034.1.gene3741. | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | CP000647.1.gene4402. | Protein | 0.0 | 79 |
| rpoB | NP_871525.1 | hypothetical protein | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | NP_871525.1 | hypothetical protein | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| rpoB | NP_871525.1 | hypothetical protein | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | NP_871525.1 | hypothetical protein | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | NP_871525.1 | hypothetical protein | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | NP_871525.1 | hypothetical protein | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | NP_871525.1 | hypothetical protein | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | NP_871525.1 | hypothetical protein | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| rpoB | NP_871525.1 | hypothetical protein | NC_008702.1.4609796. | Protein | 0.0 | 63 |
| rpoB | NP_871525.1 | hypothetical protein | CP002695.1.gene18.p0 | Protein | 0.0 | 63 |
| rpoB | NP_871525.1 | hypothetical protein | NC_011035.1.6448762. | Protein | 0.0 | 61 |
| rpoB | NP_871525.1 | hypothetical protein | NC_012469.1.7686402. | Protein | 0.0 | 45 |
