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Name : rpoB (SO_0224) Accession : NP_715864.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit RpoB Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 232367 - 236404 bp Length : 4038 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATTCTGAAAAGAAGCGTATTCGCAAAGACTTTGGTAAGCGTCCACAGGTGTTGGATATTCCTTACCT TTTGTCTATTCAGTTAGACTCTTTTAAGAAGTTCACCGATCAAGATCCTACCGGTGAGCGCGGTCTTGAAGCCGCCTTCC GTAGCGTTTTTCCCATCAAGAGCTTTTCTGGTAACTCAGAACTGCAATACGTCAGCTATAAGCTTGGCGAGCCTGTTTTT GATGTGAAAGAGTGTCAGATCCGTGGTGTTACATATTCAGCTCCACTGCGCGTTAAATTACGCATGGTGTTGTATGACCG TGAAGCAGCGGCCGGCACTGTAAAAGATATTAAAGAACAAGAAGTCTACATGGGTGATATCCCATTGATGACTGACAACG GTACCTTTGTAATCAACGGTACTGAGCGTGTAATCGTTTCTCAATTACACCGCAGCCCAGGCGTATTCTTCGATCACGAC CGTGGTAAAACCCACTCATCAGGTAAGGTACTGTATAACGCACGTATCATCCCTTACCGTGGTTCATGGTTAGACTTTGA ATTCGATCCTAAAGATGCACTATTCGTACGTATCGACCGTCGCCGTAAATTACCAGCGACCATCATTCTGCGTGCATTAG AGTACTCTACTCAAGAGATCCTTGACCTGTTCTTCGAACGTGTTGAGTTCAAGATCAAGAAAGATACTCTGGTTATGACC TTAGTCCCTGAGCGTCTGCGTGGCGAAACCGCCAGCTACGACATCAAGGATGCTGAAGGTACTGTATTGGTAGAAGCGGG CCGTCGTGTGACTGCACGCCACATTCGCCAACTTGAAAAAACTAACACCACTGAACTCGAAGTACCAGTTGAGTACATCG TGGGCAAATATGCTGCTCAAGATTACATCGATCCGGATACAGGTGAAGTATTGGTTTCTGCTAACAGTGAAATCAGCTTA GAAGACTTAGCGAAGTTATCACTAGCAGGCATCAAAGAGCTGAGCACGTTATACATTAACGAGCTGGATCACGGTGCTTA CATCTCTGACACTCTGCGTATTGATCCAACCACTAACCGCTTAGAAGCGTTAGTTGAGATCTACCGTATGATGCGTCCTG GTGAGCCACCAACCAAAGATGCAGCAGAAGCACTGTTCCAAAACTTATTCTTCAGTGAAGAACGTTATGACCTGTCTAAA GTCGGTCGTATGAAGTTCAACCGTCGTCTCAGCATTCCTGATGACGAAGGTAGCGGTGTATTGTCTAAAGAAGACATCGT TGCTGTAATGAAGAACATTATTCACATCCGTAACGGCTTCGACGAAGTGGACGATATCGACCACTTAGGTAACCGTCGTA TTCGTTCTGTGGGTGAGATGGCTGAAAACCAATTCCGTGTTGGTCTGGTCCGTGTTGAGCGCGCCGTGCGTGAACGTCTG TCATTAGGCGATCTGAACGAGCTGATGCCACAAGACTTAATCAACGCTAAGCCAATTTCTGCTGCAGTGAAAGAGTTCTT CGGTTCTTCTCAGCTGTCACAATTCATGGACCAAAACAACCCGCTGTCAGAAGTAACGCATAAGCGTCGTATTTCTGCTC TTGGCCCAGGTGGTTTGACCCGTGAACGTGCAGGCTTCGAAGTCCGCGACGTACATCCAACGCATTATGGTCGTTTATGT CCAATTGAGACCCCTGAAGGTCCAAACATTGGTCTAATCAACTCATTAGCAAGCTTTGCCCGTACTAACTCATACGGCTT CTTAGAAACACCATACCGCAAAGTGGTAGACGGTGTGATCACTGACGAAGTGGAATACTTGTCAGCGATTGAAGAAGGTC GTTATGTAATTGCACAGGCGAACATCGAAGTTGACTCTGAAGGCCGCATGGTTGAAGAGCAGATCGCATGTCGTCACAAA GGTGAATCTACCTTTATGCGCGCATCTGACATTCAATACATGGACGTATCGCCACAACAGATTATTTCTGTTGCTGCGTC TCTGATCCCGTTCTTAGAACACGACGACGCGAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCGGTACCAACAT TGCGCTCTGAAAAGCCGCTAGTAGGTACGGGTATTGAACGCACGCTCGCTGTGGATTCTGGCGTAGTTGTTGCCGCCAAA CGTGGCGGTGTGATCGATTACGTTGATGCGAGCCGCATCGTCGTTAAAGTAAATGAAGACGAGCTGCGCCCAGGCGAAGC GGGTATCGACATTTACAACCTGACTAAGTACACCCGTTCTAACCAAAACACGTGTATCAACCAACGTCCATGTTGCAGCG TTGGTGAGCCAGTTGTACGTGGTGACGTGTTAGCAGACGGTCCGTCTACTGACTTAGGTGACTTAGCCCTTGGCCAGAAC ATGCGTATCGCGTTCATGCCTTGGAACGGTTACAACTTCGAAGACTCGATCTTAATTTCTGAGCGTGTTGCACAGGAAGA CCGTTTCACCACTATCCACATTCAAGAGCTGTCTTGTATCGCTCGTGATACTAAGCTGGGTAGCGAAGAAATCACGGCTG ACATTCCAAACGTAGGTGAATCTGCGCTGTCGAAACTCGACGAGTCAGGTATCGTTTACATCGGTGCAGAAGTGAAGGGC GGCGACATTCTGGTTGGTAAAGTGACGCCAAAAGGCGAAACACAACTCACTCCAGAAGAGAAGTTACTGCGCGCCATCTT CGGTGAGAAAGCGTCTGATGTGAAAGACAGCTCACTGCGTGTACCTAACTCTGTTAAAGGTACCATCATCGACGTTCAGG TATTTACCCGTGACGGCGTTGAAAAAGACAAACGCGCCATTGAAATCGAAGAAATGCACATTGCCCAAGCTCGTAAAGAC TTAGGTGAAGAGTTCAAGATCCTTGAAGAAGGTGTATTGAGCCGTGCACGCAACTTATTATTAAGTGCCGGTTTCTCTGA AGCACAAATCGCAGCATTGCCACGTAAAGATGTATTGGTTCAAGTCATTGACGATGAAGCCAAACAAACTGAGCTTGAGC AATTAGCTGAACAGCATGAAGAGCTGAAAGCAGACTTCGATAAGAAGTTTGAAATCAAACGCCGCAAGATCACCCAAGGT GATGACTTGGCACCAGGCGTACTGAAGATCGTTAAGGTTTACTTAGCGGTTAAACGTACTATCCAACCAGGTGACAAGAT GGCGGGTCGTCACGGTAACAAGGGTGTTATCTCTAAGATTAACCCAATTGAAGACATGCCGTACGACGAGCAAGGCAATC CTGTGGACATCGTGTTGAACCCGCTAGGTGTTCCATCACGTATGAACATCGGTCAGGTTCTTGAAGTTCACTTAGGTGCT GCGGCTAAAGGTATTGGTCACAAGATTGCTGCCATGCTGGAAGATCAGCGCGAGAAGGGACTTGCTGAAGTACGTAATTA CATCAAACAAGTGTACGAATTAGGTGACGAAGTGCAGCAGCGCGTTGACATCGATTCATTCACTGACGATGAGTTACTGC GCTTAGCGAACAACCTGAAAGGCGGTATCCCAGTTGCTACACCAGCCTTCGATGGTGCTAAAGAGAAAGAGATCAAGCAG ATGCTTGAGCTTGCAGGCTTGCCAACCTCTGGTCAGCTGAAGTTATTTGATGGTCGTACCGGTAACGAATTTGAGCGTCC AGTAACTGTTGGTTACATGTACATGCTCAAACTGAACCACTTAGTTGACGACAAGATGCACGCCCGTTCTACCGGTTCGT ACAGCTTAGTGACTCAACAACCATTGGGCGGTAAAGCTCAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCA CTCGAAGCATACGGTGCCGCTTATACGCTTCAAGAAATGCTCACCGTGAAATCGGATGACGTTAACGGTCGTACACAGAT GTATAAGAACATCGTCGACGGTAACCATCAGATGCAGCCTGGCATGCCAGAGTCCTTCAACGTATTACTGAAGGAGATCC GTTCACTCGGTATTAATATCGAGTTGGATCAGGAATAA Protein sequence : MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGEPVF DVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHD RGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMT LVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGKYAAQDYIDPDTGEVLVSANSEISL EDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSK VGRMKFNRRLSIPDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC PIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVITDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHK GESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVAAK RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVRGDVLADGPSTDLGDLALGQN MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD LGEEFKILEEGVLSRARNLLLSAGFSEAQIAALPRKDVLVQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQG DDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGA AAKGIGHKIAAMLEDQREKGLAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQ MLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA LEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP001918.1.gene250.p | Protein | 0.0 | 81 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP001138.1.gene4362. | Protein | 0.0 | 81 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP000034.1.gene3741. | Protein | 0.0 | 81 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_002695.1.914942.p | Protein | 0.0 | 81 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP000647.1.gene4402. | Protein | 0.0 | 81 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP004022.1.gene2794. | Protein | 0.0 | 80 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | NP_715864.1 | DNA-directed RNA polymerase beta subunit RpoB | NC_012469.1.7686402. | Protein | 2e-178 | 45 |
