Name : ccmF (SO_0266) Accession : NP_715906.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Unknown Product : cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 265671 - 267650 bp Length : 1980 bp Strand : + Note : - DNA sequence : ATGATCCCAGAACTTGGACACTTTTCGCTGATAATAGGAGTGGCTTTTGCCTTCTTATTAACCAGCGTTCCCCTTATAGG TGTTGCCCGTAAAGACCAATATCTAGTGAGGTATGCTTGGCCGTTAGCCTACGGAATGTTCTTTTTTATCGCTTTATCCG TAGTATCACTTGGTTACAGCTTCGCCGTTGATGATTTCTCCGTGGCCTATGTGGCACATCACTCTAATTCTCAGTTACCT ATCTTCTTTAAGATTGCGGCCGTATGGGGCGGTCATGAAGGGTCGCTGCTATTCTGGGTGTTCGCGCTATCCACTTGGGC TGCCTCTGTTGCTTTATTCAGTAAAGGCTTAGAAGAAGTCTTCACCGCTCGCGTGTTAGCGGTATTGGCATTGATTGTGA TTGGCTTCAGCTTGTTTATGTTACTCACTTCTAGCCCATTTGAACGTATATTCCCAATGCCTGCTGAAGGCCGCGACTTA AATCCAATGCTGCAGGATGTGGGCTTAATCTTCCACCCTCCGATGTTATATTTGGGTTATGTGGGTTTCTCAGTCAGTTT TGCATTTGCGATTGCAGCTTTGATGAGTGGTCACCTTGATTCTGCTTGGGCTCGTTGGTCGCGTCCTTGGACCTTAGCCG CTTGGGTTTTCCTCACTGGTGGTATTGCATTAGGTTCTTGGTGGGCGTATTACGAATTAGGCTGGGGTGGATGGTGGTTC TGGGATCCAGTAGAAAACGCTTCATTTATGCCTTGGCTAGTGGGTACGGCTTTAGTGCATTCACTGATCGTGACGGAAAA GCGCGGTGCATTCCGTAACTGGACGGTATTGCTGTCTATCTTCGCATTCTCGCTAAGTTTACTCGGTACCTTTATCGTAC GCTCTGGTGTGTTGACTTCAGTGCATTCATTTGCAGCCGATCCAAGCCGCGGTATGTTTATTCTATTATTGCTTGGTCTC GCTATCGGTGGTTCGCTCACTTTGTTTGCCTTCCGTGCAAGTGAAATGAGCAGCCCTGCACGCTTCGAGCTGAAATCAAA AGAAACCATGCTGTTAGTTTGTAACGTGTTACTGACGGTTGCAGCGGGTACTGTTCTGTTAGGCACTTTATACCCACTGC TGATCGATGCGTTAGGCATGGGTAAGATTTCTGTTGGACCTCCATACTTTAACGCTGTGTTTGTACCCATAGTACTTGTA CTGTTTGCCTTTATGGGCGTCGGTCCAATCATTCGTTGGAAAAAATCGAAAGCTGGTGAATTGAAGCGACAGTTACTCGT ACCTGCATTAGTATCTCTGGTGATTGGTATTGTCACGCCGTTTATCGTCGATGGGGCCTTTAACGCTTGGGTTGCTTGCG GTATCGCCGCTGCAGCTTGGATTATTTTGGCAACCGCAAAAGCAGCTTACAGCATCGTTAAGCCTAAAGATGGTGAAGTA AGCATCGCACGTATGGGCCGTAGCCAACTCGGTATGATCATCGCGCACTTAGGTATTGCTGTGTCTGTTATTGGTGCCAC TATGGTGTCTAACTACTCAGTGGAGAAAAGTGTGCGTATGGGGCCTGGCGTAAGCCAAGAGCTAGCGGGTTACACCTTTA AATATCTCGAAACTAAAAACGTTGTTGGTCCTAATTACACTGCGCAGCAAGGTCAAATTGAGATTTACAAAGGCGATAAG TTACTGACACTGCTCAAACCCGATCGTCGCCAATACAATGTGCGTACTATGGATATGACCGAAGCCGGTATCGATTGGGG TCTGTTCCGCGATCTGTATGTGACGATGGGCGATCCGATTAGTAGTACTGAATTTGCTGTGCGTTTGAACTACAAGCCGT TTGTGCGTTGGTTATGGTTCGGAGCAATATTCATGATGGTCGGCGGTTTCTTTGCCGCATCGGATAAACGCTATCGCTCA AAAGTCGCGGCTACCGTTAAACCGCAAGCTGAAAAAGCGAAATTAGCTACCGCTCAATAA Protein sequence : MIPELGHFSLIIGVAFAFLLTSVPLIGVARKDQYLVRYAWPLAYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERIFPMPAEGRDL NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWVFLTGGIALGSWWAYYELGWGGWWF WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV LFAFMGVGPIIRWKKSKAGELKRQLLVPALVSLVIGIVTPFIVDGAFNAWVACGIAAAAWIILATAKAAYSIVKPKDGEV SIARMGRSQLGMIIAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS KVAATVKPQAEKAKLATAQ |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 1e-142 | 54 |
ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 5e-120 | 49 |