Gene Information

Name : ccmF (SO_0266)
Accession : NP_715906.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Unknown
Product : cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG1138
EC number : -
Position : 265671 - 267650 bp
Length : 1980 bp
Strand : +
Note : -

DNA sequence :
ATGATCCCAGAACTTGGACACTTTTCGCTGATAATAGGAGTGGCTTTTGCCTTCTTATTAACCAGCGTTCCCCTTATAGG
TGTTGCCCGTAAAGACCAATATCTAGTGAGGTATGCTTGGCCGTTAGCCTACGGAATGTTCTTTTTTATCGCTTTATCCG
TAGTATCACTTGGTTACAGCTTCGCCGTTGATGATTTCTCCGTGGCCTATGTGGCACATCACTCTAATTCTCAGTTACCT
ATCTTCTTTAAGATTGCGGCCGTATGGGGCGGTCATGAAGGGTCGCTGCTATTCTGGGTGTTCGCGCTATCCACTTGGGC
TGCCTCTGTTGCTTTATTCAGTAAAGGCTTAGAAGAAGTCTTCACCGCTCGCGTGTTAGCGGTATTGGCATTGATTGTGA
TTGGCTTCAGCTTGTTTATGTTACTCACTTCTAGCCCATTTGAACGTATATTCCCAATGCCTGCTGAAGGCCGCGACTTA
AATCCAATGCTGCAGGATGTGGGCTTAATCTTCCACCCTCCGATGTTATATTTGGGTTATGTGGGTTTCTCAGTCAGTTT
TGCATTTGCGATTGCAGCTTTGATGAGTGGTCACCTTGATTCTGCTTGGGCTCGTTGGTCGCGTCCTTGGACCTTAGCCG
CTTGGGTTTTCCTCACTGGTGGTATTGCATTAGGTTCTTGGTGGGCGTATTACGAATTAGGCTGGGGTGGATGGTGGTTC
TGGGATCCAGTAGAAAACGCTTCATTTATGCCTTGGCTAGTGGGTACGGCTTTAGTGCATTCACTGATCGTGACGGAAAA
GCGCGGTGCATTCCGTAACTGGACGGTATTGCTGTCTATCTTCGCATTCTCGCTAAGTTTACTCGGTACCTTTATCGTAC
GCTCTGGTGTGTTGACTTCAGTGCATTCATTTGCAGCCGATCCAAGCCGCGGTATGTTTATTCTATTATTGCTTGGTCTC
GCTATCGGTGGTTCGCTCACTTTGTTTGCCTTCCGTGCAAGTGAAATGAGCAGCCCTGCACGCTTCGAGCTGAAATCAAA
AGAAACCATGCTGTTAGTTTGTAACGTGTTACTGACGGTTGCAGCGGGTACTGTTCTGTTAGGCACTTTATACCCACTGC
TGATCGATGCGTTAGGCATGGGTAAGATTTCTGTTGGACCTCCATACTTTAACGCTGTGTTTGTACCCATAGTACTTGTA
CTGTTTGCCTTTATGGGCGTCGGTCCAATCATTCGTTGGAAAAAATCGAAAGCTGGTGAATTGAAGCGACAGTTACTCGT
ACCTGCATTAGTATCTCTGGTGATTGGTATTGTCACGCCGTTTATCGTCGATGGGGCCTTTAACGCTTGGGTTGCTTGCG
GTATCGCCGCTGCAGCTTGGATTATTTTGGCAACCGCAAAAGCAGCTTACAGCATCGTTAAGCCTAAAGATGGTGAAGTA
AGCATCGCACGTATGGGCCGTAGCCAACTCGGTATGATCATCGCGCACTTAGGTATTGCTGTGTCTGTTATTGGTGCCAC
TATGGTGTCTAACTACTCAGTGGAGAAAAGTGTGCGTATGGGGCCTGGCGTAAGCCAAGAGCTAGCGGGTTACACCTTTA
AATATCTCGAAACTAAAAACGTTGTTGGTCCTAATTACACTGCGCAGCAAGGTCAAATTGAGATTTACAAAGGCGATAAG
TTACTGACACTGCTCAAACCCGATCGTCGCCAATACAATGTGCGTACTATGGATATGACCGAAGCCGGTATCGATTGGGG
TCTGTTCCGCGATCTGTATGTGACGATGGGCGATCCGATTAGTAGTACTGAATTTGCTGTGCGTTTGAACTACAAGCCGT
TTGTGCGTTGGTTATGGTTCGGAGCAATATTCATGATGGTCGGCGGTTTCTTTGCCGCATCGGATAAACGCTATCGCTCA
AAAGTCGCGGCTACCGTTAAACCGCAAGCTGAAAAAGCGAAATTAGCTACCGCTCAATAA

Protein sequence :
MIPELGHFSLIIGVAFAFLLTSVPLIGVARKDQYLVRYAWPLAYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERIFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWVFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFAFMGVGPIIRWKKSKAGELKRQLLVPALVSLVIGIVTPFIVDGAFNAWVACGIAAAAWIILATAKAAYSIVKPKDGEV
SIARMGRSQLGMIIAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ccmF AAN62106.1 putative cytochrome C-type biogenesis protein CcmF Not tested PAGI-2(C) Protein 1e-142 54
ccmF YP_217241.1 cytochrome c-type biogenesis protein Not tested SPI-12 Protein 5e-120 49