Gene Information

Name : hlyA (c3570)
Accession : NP_755445.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Virulence
Product : hemolysin A
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG2931
EC number : -
Position : 3418896 - 3421970 bp
Length : 3075 bp
Strand : +
Note : Residues 1 to 1024 of 1024 are 98.63 pct identical to residues 1 to 1023 of 1023 from SwissProt.40 : >sp|P09983|HLY1_ECOLI HEMOLYSIN, CHROMOSOMAL

DNA sequence :
ATGCCAACAATAACCACTGCACAAATTAAAAGCACACTACAGTCTGCAAAGCAATCCTCTGCAAATAAATTGCACTCAGC
AGGACAAAGCACGAAAGATGCATTAAAAAAAGCAGCAGAGCAAACCCGCAATGCGGGAAACAGACTCATTTTACTTATCC
CTAAAGATTATAAAGGACAGGGTTCAAGCCTTAATGACCTTGTCAGGACGGCAGATGAACTGGGAATTGAAGTCCAGTAT
GATGAAAAGAATGGCACGGCGATTACTAAACAGGTATTCGGCACAGCAGAGAAACTCATTGGCCTCACCGAACGGGGAGT
GACTATCTTTGCACCACAATTAGACAAATTACTGCAAAAGTATCAAAAAGCGGGTAATAAATTAGGCGGCAGTGCTGAAA
ATATAGGTGATAACTTAGGAAAGGCAGGCAGTGTACTGTCAACGTTTCAAAATTTTCTGGGTACTGCACTTTCCTCAATG
AAAATAGACGAACTGATAAAGAGACAAAAATCTGGTAGCAATGTCAGTTCTTCTGAACTGGCAAAAGCGAGTATTGAGCT
AATCAACCAACTCGTGGACACAGCTGCCAGCATTAATAATAATGTTAACTCATTTTCTCAACAACTCAATAAGCTGGGAA
GTGTATTATCCAATACAAAGCACCTGACCGGTGTTGGTAATAAGTTACAGAATTTACCTAACCTTGATAATATCGGTGCA
GGGTTAGATACTGTATCGGGTATTTTATCTGCGATTTCAGCAAGCTTCATTCTGAGCAATGCAGATGCAGATACCGGAAC
TAAAGCTGCAGCAGGTGTTGAATTAACAACGAAAGTACTGGGTAATGTTGGAAAAGGTATTTCTCAATATATTATCGCAC
AGCGCGCTGCACAGGGATTATCTACATCTGCTGCTGCTGCCGGTTTAATTGCTTCTGTAGTGACATTAGCAATTAGTCCC
CTCTCATTCCTGTCCATTGCCGATAAGTTTAAACGTGCCAATAAAATAGAGGAGTATTCACAACGATTCAAAAAACTTGG
ATACGATGGTGACAGTTTACTTGCTGCTTTTCACAAAGAAACAGGAGCTATTGATGCATCGTTAACAACGATAAGCACTG
TTCTGGCTTCAGTATCTTCAGGTATTAGTGCTGCTGCAACGACATCTCTGGTTGGTGCACCGGTAAGCGCGCTGGTAGGG
GCTGTTACGGGGATAATTTCAGGCATCCTTGAGGCTTCAAAACAGGCAATGTTTGAACATGTCGCCAGTAAAATGGCCGA
TGTTATTGCTGAATGGGAGAAAAAACACGGCAAAAATTACTTTGAAAATGGATATGATGCCCGCCATGCTGCATTTTTAG
AAGATAACTTTAAAATATTATCTCAGTATAATAAAGAGTATTCTGTTGAAAGATCAGTCCTCATTACCCAGCAACATTGG
GATACGCTGATAGGTGAGTTAGCGGGTGTCACCAGAAATGGAGACAAAACACTCAGTGGTAAAAGTTATATTGACTATTA
TGAAGAAGGAAAACGTCTGGAGAAAAAACCGGATGAATTCCAGAAGCAAGTCTTTGACCCATTGAAAGGAAATATTGACC
TTTCTGACAGCAAATCTTCTACGTTATTGAAATTTGTTACGCCATTGTTAACTCCCGGTGAGGAAATTCGTGAAAGGAGG
CAGTCCGGAAAATATGAATATATTACCGAGTTATTAGTCAAGGGTGTTGATAAATGGACGGTGAAGGGGGTTCAGGACAA
GGGGTCTGTATATGATTACTCTAACCTGATTCAGCATGCATCAGTCGGTAATAACCAGTATCGGGAAATTCGTATTGAGT
CACACCTGGGAGACGGGGATGATAAGGTCTTTTTATCTGCCGGCTCAGCCAATATCTACGCAGGTAAAGGACATGATGTT
GTTTATTATGATAAAACAGACACCGGTTATCTGACCATTGATGGCACAAAAGCAACCGAAGCGGGTAATTACACGGTAAC
ACGTGTACTTGGTGGTGATGTTAAGATTTTACAGGAAGTTGTGAAGGAGCAGGAGGTTTCAGTTGGAAAAAGAACTGAAA
AAACGCAATATCGGAGTTATGAATTCACTCATATCAATGGTAAAAATTTAACAGAGACTGATAACTTATATTCCGTGGAA
GAACTTATTGGGACCACGCGTGCCGACAAGTTTTTTGGCAGTAAATTTACTGATATCTTCCATGGCGCGGATGGTGATGA
CCATATAGAAGGAAATGATGGGAATGACCGCTTATATGGTGATAAAGGTAATGATACGCTGAGGGGCGGAAACGGGGATG
ACCAGCTCTATGGCGGTGATGGCAATGATAAGTTAATTGGGGGGACAGGTAATAATTACCTTAACGGCGGTGACGGAGAT
GATGAGCTTCAGGTTCAGGGGAATTCTCTTGCTAAAAATGTATTATCCGGTGGAAAAGGTAATGACAAGTTGTACGGCAG
TGAGGGAGCAGATCTGCTTGATGGCGGAGAAGGGAATGATCTTCTGAAAGGTGGATATGGTAATGATATTTATCGTTATC
TTTCAGGATATGGCCATCATATTATTGACGATGATGGGGGGAAAGACGATAAACTCAGTTTGGCTGATATTGATTTCCGG
GATGTGGCCTTCAGGCGAGAAGGTAATGACCTCATCATGTATAAAGCTGAAGGTAATGTTCTTTCCATTGGTCATAAAAA
TGGTATTACATTCAGGAACTGGTTTGAAAAAGAGTCAGGTGATATCTCTAATCACCAGATAGAGCAGATTTTTGATAAAG
ACGGCAGGGTAATCACACCAGATTCCCTTAAAAAGGCACTTGAGTATCAACAGAGTAATAATAAGGCAAGTTATGTGTAT
GGGAATGATGCATTAGCCTATGGAAGTCAGGATAATCTTAATCCATTAATTAATGAAATCAGCAAAATCATTTCAGCTGC
AGGTAATTTTGATGTTAAAGAGGAAAGAGCTGCAGCTTCTTTATTGCAGTTGTCCGGTAATGCCAGTGATTTTTCATATG
GACGGAACTCAATAACTTTGACAGCATCAGCATAA

Protein sequence :
MPTITTAQIKSTLQSAKQSSANKLHSAGQSTKDALKKAAEQTRNAGNRLILLIPKDYKGQGSSLNDLVRTADELGIEVQY
DEKNGTAITKQVFGTAEKLIGLTERGVTIFAPQLDKLLQKYQKAGNKLGGSAENIGDNLGKAGSVLSTFQNFLGTALSSM
KIDELIKRQKSGSNVSSSELAKASIELINQLVDTAASINNNVNSFSQQLNKLGSVLSNTKHLTGVGNKLQNLPNLDNIGA
GLDTVSGILSAISASFILSNADADTGTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASVVTLAISP
LSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVG
AVTGIISGILEASKQAMFEHVASKMADVIAEWEKKHGKNYFENGYDARHAAFLEDNFKILSQYNKEYSVERSVLITQQHW
DTLIGELAGVTRNGDKTLSGKSYIDYYEEGKRLEKKPDEFQKQVFDPLKGNIDLSDSKSSTLLKFVTPLLTPGEEIRERR
QSGKYEYITELLVKGVDKWTVKGVQDKGSVYDYSNLIQHASVGNNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDV
VYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKILQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVE
ELIGTTRADKFFGSKFTDIFHGADGDDHIEGNDGNDRLYGDKGNDTLRGGNGDDQLYGGDGNDKLIGGTGNNYLNGGDGD
DELQVQGNSLAKNVLSGGKGNDKLYGSEGADLLDGGEGNDLLKGGYGNDIYRYLSGYGHHIIDDDGGKDDKLSLADIDFR
DVAFRREGNDLIMYKAEGNVLSIGHKNGITFRNWFEKESGDISNHQIEQIFDKDGRVITPDSLKKALEYQQSNNKASYVY
GNDALAYGSQDNLNPLINEISKIISAAGNFDVKEERAAASLLQLSGNASDFSYGRNSITLTASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyA NP_755445.1 hemolysin A Virulence PAI I CFT073 Protein 0.0 100
hlyA CAD42039.1 HlyA protein Virulence PAI II 536 Protein 0.0 98
hlyA CAD33759.1 hemolysin A Virulence PAI I 536 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hlyA NP_755445.1 hemolysin A VFG0906 Protein 0.0 100
hlyA NP_755445.1 hemolysin A VFG1500 Protein 0.0 98
hlyA NP_755445.1 hemolysin A VFG1558 Protein 0.0 98
hlyA NP_755445.1 hemolysin A VFG0840 Protein 0.0 62