|
Name : rpoB (bbp035) Accession : NP_777673.1 Strain : Buchnera aphidicola Bp (Baizongia pistaciae) Genome accession: NC_004545 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 42481 - 46512 bp Length : 4032 bp Strand : - Note : COG0085; transcriptase beta chain; RNA polymerase beta subunit DNA sequence : ATGGTTGTTTACTCTAGTACAGAAAAAAAACGAATACGCAAAGATTTCGGAAAACGTCCAAAAGTTTTGGATATACCTTA CCTTCTTTCTATTCAACTAAATTCATTTCAGAAATTTATTAAACATGATCCAAATGGAATACATGGATTAGAATCAGCAT TCCGCTCCATTTTTCCTATTCGGAGTTATAATGGCAATTCAGAACTACAATATATAAATTATAAATTAGGACAACCTATT TTTAATGTAAAAGAATGTCAAACACGTGGAATGACCTATTCATCTCCATTACGCGTAAAACTACGTTTAGTTATTTATGA AAAAGAAACATTAGACATTACTGTAAAAGATATAAAAGAACAAGAAGTATATATGGGAGAAATTCCTTTAATGACTACCA ATGGAACCTTTATAATTAACGGTACTGAGAGAGTAGTTGTATCTCAATTACATCGCAGCCCAGGGGTATTTTTTGATAGT GACAAAGGAAAAACACATTCATCAGGAAAAGTTTTATATAACGCTCGAATCATTCCATATAGAGGATCATGGTTAGACTT TGAATTTGATCCTAAAGACAATTTATTTTTTCGTATCGATAGACGAAGAAAACTACCTATAAGCATTATCTTAAAAGCAT TAAATTATAATACAGAACAAATATTAGACACATTTTTTAAAAAAAATATTTTTAAATTTACTGAAAACAGCATCTTAATG AAATTAGTTCCACATAGACTACGAGGCGAAACAGCATCTTTTGACATATGTATCGATAACAAAACTTATATAAAAAAAGG TCAACGAATTACTGCGCGACATATCAATATACTAAAAGAAAAAAAAATCCATACAATTAAAGTTCCCACTGAATATTTAA TAGGAAAAATATCGGCTAAAAATTACTTCAATAAAAAAACTAATGAAATTATTGTATCTGCTAATACAGAACTAAATATT AATATTATAAAAGAACTAAAAAATAATGAATATACTAATATCGAAACTATTTTTACCAACGATTTAGACCACGGTCCATA TATTTCTGAAACTCTAAATATCGATCCAACACATGATAAACTCAGTGCTCTAGTAGAAATTTATCGTATGATGAGACCAG GCGAACCTCCAACACGCGAAGCAGCTGAAAACTTATTTGAAAATTTATTTTTTAGTGAAGAAAGATATGACTTATCCTCA GTAGGTCGCATGAAATTTAATCGTTCTTTGCAAAAACAAAACATCACAGAAAGAGGAGTACTCAATCAATCAGATATAAT TAGTGTTATTAAAAAGTTAATTGATATTCGAAACGGACATGGAGAAATTGATGATATTGATCATTTAGGAAACCGTCGTG TTAGATCAGTAGGAGAAATGGCAGAAAATCAATTTCGGATTGGACTAATTCGCGTAGAACGAGCAGTTAAAGATCGATTA TCTTTAGGAGACTTAGACATGCTTATGCCTCAAGATATGATCAATGCTAAACCTATTTCTGCAGCAATAAAAGAATTTTT TGGATCTAGTCAATTATCTCAATTCATGGACCAAAATAACCCTTTATCAGAAATTACGCATAAACGTCGTATTTCGGCGT TGGGATTAGGAGGATTAACTCGAGAAAGAGCAGGATTTGAAGTACGAGACGTACATCCTACACACTATGGACGAGTATGT CCCATTGAAACACCAGAAGGTCCTAATATTGGATTAATCAACTCTTTATCAGTATATGCACAAACCAATTCATATGGATT TTTAGAAACACCGTACCGAAAAATACATAATGGAAAAGTTACAAATGAAATTAAATATTTATCTGCAATTGAAGAAGGTA ATTTTATTATTGCTCAAGCAAATACAAACTTAGATGAAACAGGCGCATTTGTTGAAGATTTAATAACTTGTCGCTATAAA GGTGAATCAAGTTTATTTAATAAAAATCAAATAAATTATATGGATGTATCAACACAGCAAATAGTATCCGTAGGAGCGTC ATTAATTCCTTTTCTCGAGCATGATGATGCTAACCGAGCGTTGATGGGAGCAAATATGCAACGACAAGCCGTACCTACCT TACGTTCTGAAAAACCATTAGTAGGTACAGGAATGGAAAGAGCAGTAGCTGTCGATTCAGGCGTAACAATAATAGCAAAG CGAGGAGGGATAGTTCAATATGTCGACGCATCTAGAATAATTATTAAAGTTAAAAAAAATGAAATAAATTCAGAAGAAGC CGGGATTGATATTTATAATTTAAAAAAATATACACGATCTAACCAAAATACATGTATTAATCAGATACCATGTATTTCGC TAGGAGAAAACGTAGAAAAAGGAAACGTATTAGCTGATGGACCATCAACCGATTTAGGAGAACTAGCATTAGGACAAAAT ATGCGAGTAGCATTTATGCCATGGAATGGATATAACTTTGAAGATTCAATATTAATATCAGAAAAAGTTGTTCAAGAAGA TAGATTTACTACTATTCATATTCAAGAACTAGCATGTATTTCTCGCGATACTAAATTAGGTTCCGAAGAAATTACTTCAG ATATACCAAATGTAGGTGAAGCTGCTTTATCAAAATTAGACGAATCTGGCATTGTTTATATTGGAGCTGAAGTCAACGGA GGTGACATCCTTGTTGGAAAGGTTACTCCAAAAGGAGAAACACAACTAACACCAGAAGAAAAACTATTAAGAGCTATTTT TGGAGAAAAAGCTTCAGACGTTAAAGATTCTTCTCTTAGAGTACCTAATGGAGTTTTAGGAACAGTAATTGATGTTCAAA TATTCACTAGAGATGGAGTAAAAAAAGATAAACGAGCTTTAGAAATTGAAGAAATGCAATTAAAACAAGCAAAAAAAGAT CTAACTGAAGAACAAAAAGTATTTGAATTAGGATTATTTACTCAAATTAAATCCACGCTTATAAATTCAGGAATGAACAT TGATCAGTTAAACAAAATACCTAAATCAGAACTATTTAAAGTTAAAGTAACTAATAATTTATACCAAAAAAAAATACATA AACTATTTTTAAAATATGAAGAATTAAAAAAATGTTTTAATAAAAAATTAGAAACAACACGAAATAAAATAACCCAAGGT GATGATTTAGCCCCTGGTGTATTAAAAATTGTAAAAGTATATTTAGCAGTCAAAAGACACATTCAACCAGGTGATAAAAT GGCTGGACGTCATGGAAACAAAGGAGTTATTTCTAAAATAAATCCCATAGAAGATATGCCATACGATCAAAATGGACTTC CTGTTGATGTTGTATTAAATCCATTAGGTGTACCATCTAGAATGAATATTGGACAAATTTTAGAAACACATTTAGGATTA GCATCAAAGGGACTAGGTAATATCATCGATACTATGCTAAAACAGCAAAAATCAATTCTGAATATCCGAAAATTTATCCA AAAAGCTTTTAACTTAGGAAATAATACTAGACAAAAAACAAATTTAAATAATTTTTCTGACGATGAAATATTATCTTTAG CTAAAAATTTCAAAAATGGTATACCAATCTCAACACCTGTATTTGACGGAGCACAAGAAAGCGAAATTAAAGCATTATTA AAACTAGCTGATCTTCCATCATCCGGGCAAATAACATTATTTGACGGCCGCACTGGAGAAAAATTCGAAAGACCAGTAAC TGTAGGTTATATGTATATGTTAAAGTTAAATCATTTAGTCGATGATAAGATGCATGCTCGATCTACTGGATCATATAGTT TAGTTACACAACAACCATTAGGAGGAAAAGCACAATTCGGAGGTCAGCGCTTTGGAGAAATGGAAGTATGGGCACTAGAA GCATACGGTGCTGCATATACCTTACAAGAAATGTTAACAGTAAAATCTGATGACGTTAATGGGCGAACTAAAATGTATAA AAATATAGTTGATGGAAACTATAAAATGGAGCCGGGAATGCCAGAATCTTTTAACGTATTATTAAAAGAAATTAGATCAT TAGCTATCAATATAGAATTAGAGAATGAATAG Protein sequence : MVVYSSTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFQKFIKHDPNGIHGLESAFRSIFPIRSYNGNSELQYINYKLGQPI FNVKECQTRGMTYSSPLRVKLRLVIYEKETLDITVKDIKEQEVYMGEIPLMTTNGTFIINGTERVVVSQLHRSPGVFFDS DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFFRIDRRRKLPISIILKALNYNTEQILDTFFKKNIFKFTENSILM KLVPHRLRGETASFDICIDNKTYIKKGQRITARHINILKEKKIHTIKVPTEYLIGKISAKNYFNKKTNEIIVSANTELNI NIIKELKNNEYTNIETIFTNDLDHGPYISETLNIDPTHDKLSALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSS VGRMKFNRSLQKQNITERGVLNQSDIISVIKKLIDIRNGHGEIDDIDHLGNRRVRSVGEMAENQFRIGLIRVERAVKDRL SLGDLDMLMPQDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTRERAGFEVRDVHPTHYGRVC PIETPEGPNIGLINSLSVYAQTNSYGFLETPYRKIHNGKVTNEIKYLSAIEEGNFIIAQANTNLDETGAFVEDLITCRYK GESSLFNKNQINYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGMERAVAVDSGVTIIAK RGGIVQYVDASRIIIKVKKNEINSEEAGIDIYNLKKYTRSNQNTCINQIPCISLGENVEKGNVLADGPSTDLGELALGQN MRVAFMPWNGYNFEDSILISEKVVQEDRFTTIHIQELACISRDTKLGSEEITSDIPNVGEAALSKLDESGIVYIGAEVNG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVLGTVIDVQIFTRDGVKKDKRALEIEEMQLKQAKKD LTEEQKVFELGLFTQIKSTLINSGMNIDQLNKIPKSELFKVKVTNNLYQKKIHKLFLKYEELKKCFNKKLETTRNKITQG DDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISKINPIEDMPYDQNGLPVDVVLNPLGVPSRMNIGQILETHLGL ASKGLGNIIDTMLKQQKSILNIRKFIQKAFNLGNNTRQKTNLNNFSDDEILSLAKNFKNGIPISTPVFDGAQESEIKALL KLADLPSSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNYKMEPGMPESFNVLLKEIRSLAINIELENE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 80 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 67 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 66 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 62 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 61 |
| rpoB | NP_777673.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 61 |
