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Name : secD (ECA1122) Accession : YP_049228.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1274535 - 1276382 bp Length : 1848 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACCTGATGCTGGTCGTGGTGTTGTTTGTCGGCCTGCTCTATGCGCTTCCTAA CCTATATGGTGAGGATCCGGCGGTACAAGTTACTGGCGCGCGGGGAACCGCCGCCAGCGAAACGACGCTGATCCAAGTCC AGAATGTCTTAAAAGAACAAAATATCACCAGTAAGTCGATTGCATTGGAAAACGGTGCGATTCTTGCTCGCTTCTCTAAC CCTGACATTCAGCTCCGCGCGCGTGAAGCGCTCGTTAATGAGCTGGGCGAAAAATTCGTCGTTGCACTTAACCTTGCACC TGCCACGCCAACCTGGCTGCGAGTGTTGGGTGCTGAGCCGATGAAATTGGGGCTTGACCTGCGCGGCGGCGTTCACTTCC TGATGGAAGTGGATATGGATACGGCGCTGGGCAAACTGCAAGAACAAACAATGGACTCTTTGCGCAGCGATCTGCGTGAG AAGAACATTCCTTATGCCGCCGTGCGTAAGGTTGATAATTACGGCGTCGAAATTCGTTTCCGTGATGCTCAAACGCGTGA TGACGGCCTCAACTATTTGACGTCCCGTCATCGCAATCTGGTTCTCAGCAGCAGCGGCAGCAACCTGCTACGTGCAGCGA TGTCTGACGAACGTCTGCGTGAAGCGCGTGAATACGCAGTACAGCAGAACATCAATATCCTGCGTAACCGTGTGAACCAA CTTGGCGTTGCCGAACCACTGGTACAGCGTCAGGGGGCTGACCGTATCGTCGTTGAATTACCGGGTATTCAGGACACAGC ACGCGCGAAAGAAATTCTTGGTGCAACCGCTACGCTGGAATTCCGTCTGGTCAACAGTGATGCTGATGCGACAGCGGCGG CGAATGGCCGCGTGCCGGGTGATTCTGAAGTGAAGAACATGCGTGACGGTTCACCCGTTGTGTTGTTCAAACGCGTCATT CTGACGGGCGACCACATCACTGACTCCACATCAAGCAATGACGAATACAATCGTCCTCAGGTGAATATTTCTCTGGACAG CGCAGGTGGCAACACCATGTCCAACTTCACCAAAGACAGTATCGGCAAGCTGATGGCAACGCTGTTTGTGGAATACAAAG ACAGTGGCAAGAAAGATGCTACGGGTCGTTCGATACTGGAAAAACACGAAGAAGTGATCAATGTGGCGACGATTCAGTCG CGACTGGGTAACAGCTTCCGTATTACCGGTATTGATAATCCGAACGAAGCGCGTCAACTTTCTCTGCTGTTACGTGCGGG TGCGCTGATTGCTCCAATCCAGATCGTGGAAGAACGTACCATTGGGCCAACGCTGGGGATGCAGAACATCACCCAAGGAC TGGAAGCCTGTTTGTGGGGGTTGATCGCATCAATTCTCTTTATGGTCTTCTTTTACAAGAAGTTTGGTGTCATCGCGACC AGTGCGTTGGTCGCTAACCTGGTATTGATTGTCGGCGTGATGTCGTTGTTACCTGGGGCTACGCTGACCATGCCGGGTAT CGCCGGTATCGTGCTTACCCTGGCGGTCGCCGTGGATGCTAACGTATTAATTAACGAACGTATCAAGGAAGAACTCAGTA ATGGCCGTTCTGTTCAACAGGCTATTCATGAGGGCTACAAAGGTGCATTCAGTTCCATTGTTGATGCGAACGTCACGACG TTGATTAAAGTCATCATCCTGTATGCGGTTGGTACCGGTTCTATTAAAGGGTTTGCTATCACCACTGCTATTGGGATTGC GACCTCAATGTTTACGGCGATCGTCGGTACTCGTGCCATCGTTAACCTGCTTTACGGCGGTAAACGCATCAACAAGCTGT CTATCTGA Protein sequence : MLNRYPLWKYLMLVVVLFVGLLYALPNLYGEDPAVQVTGARGTAASETTLIQVQNVLKEQNITSKSIALENGAILARFSN PDIQLRAREALVNELGEKFVVALNLAPATPTWLRVLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLRE KNIPYAAVRKVDNYGVEIRFRDAQTRDDGLNYLTSRHRNLVLSSSGSNLLRAAMSDERLREAREYAVQQNINILRNRVNQ LGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKRVI LTGDHITDSTSSNDEYNRPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGKKDATGRSILEKHEEVINVATIQS RLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIAT SALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDANVTT LIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-119 | 47 |
