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Name : hrcT (ECA2077) Accession : YP_050172.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4791 EC number : - Position : 2366737 - 2367537 bp Length : 801 bp Strand : - Note : Similar to Erwinia amylovora HrcT SWALL:Q46648 (EMBL:L25828) (265 aa) fasta scores: E(): 2.4e-69, 66.92% id in 257 aa, and to Pantoea agglomerans HrcT protein HrcT SWALL:Q47858 (EMBL:X99768) (265 aa) fasta scores: E(): 4.5e-67, 62.3% id in 260 aa DNA sequence : ATGATCGCCACCATTCAGCACGTTTACGACTTTATCATCGCCATTACACTCGGCATCGCCCGGCTGTATCCCTGCTTTAT TCTGGTGCCGGTTTTCTCACTCAACGTGTTGAAAGGCATGATGCGCAACGCCGTGGTGATTTCCCTGACGCTGTTGCCCG CCCCCATCGTGCAGCAGCAACTCCTGTTGACCCCGCTCTCCTGGCCGATGCTACCCGCGCTGTTGTTCAAAGAAATCATG GTGGGATTGCTGATTGCACTCATTCTGGCGATGCCGTTCTGGCTGTTTGAGTCTGTCGGGGCGCTGTTCGATAACCAGCG CGGTGCGTTGATGGGCGGCCAGCTCAACCCCGCGCTGGGCTCGGATGCCACGCCGCTCGGTCATCTACTGAAACAGACCC TAATTCTGCTGCTGATTGTCGGTATCGGCCTAAAGGGGCTGACACAGCTGATTTGGGACAGCTACCAGATCTGGCCGGTA CTGTCCTGGCTGCCTGCGCCGAGCGAAAAAGGGTTTGAGGTGTATCTCAACCTGCTGGCCGACACCTTTACTCATCTGGT GGTCTACGCCGGGCCGCTGGTAGCGTTACTGCTGCTATTAGAGTTCAGCATTGCGTTACTCAGCCTGTATAGCCCACAGC TTCAAGTGTTCGTTCTGTCAATTCCGGCTAAATGTCTGGTCGGGATGGCATTTTTCATCATCTATCTGCCGGTGCTGCAA TATTTAGGCGACCACAAACTTCAAGGGTTGCCGGATCTCAAACACCTGCTCCCGCTGCTTTTTACCGCATCGAACAGCTA A Protein sequence : MIATIQHVYDFIIAITLGIARLYPCFILVPVFSLNVLKGMMRNAVVISLTLLPAPIVQQQLLLTPLSWPMLPALLFKEIM VGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHLLKQTLILLLIVGIGLKGLTQLIWDSYQIWPV LSWLPAPSEKGFEVYLNLLADTFTHLVVYAGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIIYLPVLQ YLGDHKLQGLPDLKHLLPLLFTASNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcT | AAB06007.1 | HrcT | Virulence | Hrp PAI | Protein | 1e-54 | 68 |
| hrcT | ABA47281.1 | HrcT | Virulence | S-PAI | Protein | 6e-44 | 57 |
| hrcT | AAT96345.1 | HrcT | Virulence | S-PAI | Protein | 1e-42 | 56 |
| hrcT | AAT96264.1 | HrcT | Virulence | S-PAI | Protein | 1e-42 | 56 |
| hrcT | AAT96305.1 | HrcT | Virulence | S-PAI | Protein | 1e-42 | 56 |
| hrcT | ABQ88361.1 | HrcT | Virulence | Hrp PAI | Protein | 5e-36 | 49 |
| hrpX | AAB05077.1 | HrpX | Virulence | Hrp PAI | Protein | 5e-36 | 49 |
| hrcT | AAG33886.1 | HrcT | Virulence | Hrp PAI | Protein | 4e-38 | 48 |
| hrcT | NP_791220.1 | type III secretion protein HrcT | Virulence | Hrp PAI | Protein | 5e-38 | 48 |
| hrcT | AAT96148.1 | HrcS | Virulence | T-PAI | Protein | 2e-38 | 47 |
| hrcT | AAT96202.1 | HrcT | Virulence | T-PAI | Protein | 2e-38 | 47 |
