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Name : hrcC (ECA2100) Accession : YP_050195.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2386393 - 2388462 bp Length : 2070 bp Strand : + Note : Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% DNA sequence : ATGCGTAAGGGATTGATACGTAATGGATCGTATAGCATTTTGCTGGTGATCTATCGCTGGTTTTGCTGGGCAATAGTGCT GATCGGGATTATCCCCGTGAATGGGGTTATTTCGTTGGCGTACGCCGCCACACCCGCCGACTGGAATAAAGGGGCGTATG CGTATTCTGCCGAGCAAACGCCACTGTCTGCGATTCTGGCGGATTTCGCCAACAGCCACGGCGTGGATTTGGTGTTGGGC AATATTGCGGACAATGAGGTGACGGCGAAGATTCGGGCGGATAATCCCACGCTGTTTCTCGACAGGCTGGCGCTGGAGCA TCGCTTCCAGTGGTTTGTGTATAACAATGCGCTGTATGTCAGCCCACAGGATGAACAGGCGTCGGTGCGTCTGGAGATCT CACCGGATGCTGCGCCTGACATCAAACAGGCACTCAGTGGCATCGGGCTGATCGACTCGCGCTTCGGCTGGGGGGAGTTA CCTGAAGAGGGCGTAGTGCTGGTTACCGGGCCGAAGGCGTATATCGATTTGATCCGTAATTTTAGCCAACAGCGGGAAAA GCAGGACGAACGGCGTAAGGTGATGATTTTCCCGCTGCGCTATGCCTCTGTATCCGACCGAACGCTGCAATACCGCGATC AAAAAATCACGATTCCGGGCGTCGCGACCATTCTCAATGAACTGATGGATGGTCAGCGAGCCGCACCGGCGGGCGCATCT GGTCCGATGCCCGTACAGCCGGATACGGGGATGGAAGCTATGCGGGACAGTACGCGTTCGCTGATGACTCGGCTCGCAAC CCGCACTAGCCCAGGACGCAGCGGTGAGGCGTCAAGCCGCGTGACGCTAAGCGGCAAGATCTCCGCTGATGTACGCAATA ATGCGCTGTTGATTCGGGATGATGAAAAACGCCGGGCGGAGTACCAACAGCTCGTCGAGCATATCGATGTACCGCAAAAT CTGGTCAACATTGATGCCATTATTTTGGATGTGGATCGTACCGCGCTGTCGCGGCTGGAAGCGAACTGGCAGGCGCAGCT CGGCAATGTGAGCGCGGGCAGCACCATGATGATGGGACGAAGCACGTTGTTTGTCAGTGATTTCAAGCGTTTCTTCGCTG ATATTCAGGCGTTGGAGGGAGAAGGGACGGCCTCCATCGTCGCCAATCCTTCCGTGCTGACGCTGGAGAACCAGCCTGCG ATTGTCGATTTCAGCCGGACGGCGTTCATCACGGCGACGGGTGAGCGTGTCGCGGACATTCAACCAGTGACGGCGGGCAC CAGCCTGCAAGTGACGCCGCGGGTGATTGGTGAAGGGGCACAGCGCAGCATCCAACTGGTTATCGATATCGAAGATGGTC AGGTCGAGACAGGGCGCGAGGGGGAAGCCTCTGGCGTGAAGCGCGGTACTGTCAGCACGCAGGCGTTGATTGGTGAGAAC CGAGCGCTGGTGTTGGGCGGTTTTCACGTCGAGGAGAGCGGTGACCGCGATCGTCGTATTCCGATCCTTGGGGATATCCC GCTGCTGGGGAAACTGTTTACCTCGACGCGTCATGAAGTCTCTCGCCGCGAGCGCCTTTTCATTCTTACACCCCACCTTG TTGGCGATCAAACCGATCCTACGCGCTATGTGTCCTCCGTCAATCGCCAGCAGTTGAACGGTGCCATGAACCGCGTGGCG CAGCGCAACGGTAAAACGGATCTCTATAGCCTGATTGAAGGCGCGTTCCGCGATCTTGCCAGCCGCCAGCTTCCTGCCGG GTTTCAGGCCGACAGCAAAGGCGCGCGATTGGGAGAGGTGTGCCGCTCACAGTCGGGCCTGATCTATGACAGCTCGCGCT ATCAATGGTATGGCAACGGTCAGGTACGCCTGAGCGTAGGCGTGGTGCGTAATGGAGGCACCCAGCCACAGCGTTTTGAT GAAGCGGCTTGTGCCAGTAGCCGCACGCTAGCGGTGGCCGTGTGGCCGAAAACGACGCTGGCACCGGGGGAATCCAGCGA GGTGTTCCTTGCTTTGCAGCCCGCGCTAACGGCTCAACCAACCCGACGCAATGTGCTGATATCAAATTAA Protein sequence : MRKGLIRNGSYSILLVIYRWFCWAIVLIGIIPVNGVISLAYAATPADWNKGAYAYSAEQTPLSAILADFANSHGVDLVLG NIADNEVTAKIRADNPTLFLDRLALEHRFQWFVYNNALYVSPQDEQASVRLEISPDAAPDIKQALSGIGLIDSRFGWGEL PEEGVVLVTGPKAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKITIPGVATILNELMDGQRAAPAGAS GPMPVQPDTGMEAMRDSTRSLMTRLATRTSPGRSGEASSRVTLSGKISADVRNNALLIRDDEKRRAEYQQLVEHIDVPQN LVNIDAIILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQPA IVDFSRTAFITATGERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGEN RALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLVGDQTDPTRYVSSVNRQQLNGAMNRVA QRNGKTDLYSLIEGAFRDLASRQLPAGFQADSKGARLGEVCRSQSGLIYDSSRYQWYGNGQVRLSVGVVRNGGTQPQRFD EAACASSRTLAVAVWPKTTLAPGESSEVFLALQPALTAQPTRRNVLISN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 69 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 7e-173 | 55 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 2e-173 | 55 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 3e-176 | 54 |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 1e-178 | 54 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 5e-134 | 42 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 6e-132 | 42 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 2e-135 | 42 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 5e-138 | 42 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 1e-130 | 41 |
