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Name : shiA (ECA0225) Accession : YP_048352.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : shikimate transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 264271 - 265668 bp Length : 1398 bp Strand : + Note : Similar to Escherichia coli shikimate transporter ShiA or b1981 SWALL:SHIA_ECOLI (SWALL:P76350) (438 aa) fasta scores: E(): 4.7e-125, 73.57% id in 420 aa DNA sequence : ATGGACACCTCGACTACGCCAACACTCTCACAGCCTGGTGGCTCATTACCTCATCAGGATGATTCACTCTCTTCTGATAA AACCCTACAAACACAGTCAGTAAGCCATTCTCAACATCGAGCAAAACGTGCAGCATGGGGCAGTTTTGTTGGTGCCGTTG TCGATTGGTACGATTTTCTTCTGTACGGAATTGTTGCCGCTCTTGTATTTAATACCGAATTTTTCCCACAGATCAGTCCG ACGATGGGGACGCTGGCGGCATTTGGTACGTTCGGCGTTGGTTTCTTGTTCCGCCCGTTAGGTGGCATGGTGTTTGGTCA CTTTGGTGACAAGCTGGGCCGTAAACGGATGTTAATGATTACGGTCTGGATGATGGGTATTTCCACTGCATTGATTGGGC TGCTGCCGTCGTTTGATTCTATTGGCTGGTGGGCACCGGCGCTGTTGGTCACGCTGCGGGCAATTCAGGGATTCGCGGTC GGTGGCGAATGGGGCGGGGCGGCGCTGTTGGCGGTAGAAAACGCGCCGAAGAAGAAGAAAGCCTTTTACAGCAGTGGCGT ACAGGTTGGCTTTGGTGTCGGGCTTTTGCTGGCAACCGGGTCGGTATCAGTGGTGAGCAATTTGACGACCAATGAGGAAT TTACCAGTTGGGGTTGGCGTTTGCCGTTCTTATTCAGCCTGATTCTAGTTGCTATCGCTTGGTGGGTACGTAATGGGATG GATGAGTCTCAGGAATTTGAAGCCAACAAAACTCTAGGTGAAAGAGCACAGAAGCTGCGTTCGTTCCCTATTATGGAAGC ACTGCGCCAGCATCCGAAGGCATTCCTGCTGATTATTGCGCTACGGCTTGGTGAGCTGCTGACGATGTATATCGTCACCG CGTTTGCACTTAATTACTCCACCACCCATCTTGGGCTATCGCGGGATATTTTCCTGAATATCGGGCTGCTGGTGGGGGCG ATAAGCTGTGTGTCTATTCCTTTCTTTGCCTATCTGGCGGATAGCTTTGGCCGTCGCCGTATCTATGTGACCGGTGCGTT GATTGGAGCCGTGAGTGCGGTGCCTTTCTTCATGGCGCTGGAAAGCCACAACACGCTGATGATTCTGTTTTTTGCCATCA TGTTGGCGAATGCTGCCCACGATATGATCGTTAGCGTACAGCAACCGATGTTTACCGAGCTATTTGGTACGGCGTATCGC TATAGCGGGGCTGGTGTGGGTTATCAGGTCGCCAGTGTGGTCGGCGGCGGATTTACACCTTTTATCGCTGTCCTGCTGGT GGAATTTATGGATGGTTCATGGCACGCGGTGGCGGCCTACCTTGCCATCGGCTGCTTACTGTCGGCAGTTGTCGGGATGG GGATGAAAGCACCTTCAGACGATACTGTGCCTCACTAA Protein sequence : MDTSTTPTLSQPGGSLPHQDDSLSSDKTLQTQSVSHSQHRAKRAAWGSFVGAVVDWYDFLLYGIVAALVFNTEFFPQISP TMGTLAAFGTFGVGFLFRPLGGMVFGHFGDKLGRKRMLMITVWMMGISTALIGLLPSFDSIGWWAPALLVTLRAIQGFAV GGEWGGAALLAVENAPKKKKAFYSSGVQVGFGVGLLLATGSVSVVSNLTTNEEFTSWGWRLPFLFSLILVAIAWWVRNGM DESQEFEANKTLGERAQKLRSFPIMEALRQHPKAFLLIIALRLGELLTMYIVTAFALNYSTTHLGLSRDIFLNIGLLVGA ISCVSIPFFAYLADSFGRRRIYVTGALIGAVSAVPFFMALESHNTLMILFFAIMLANAAHDMIVSVQQPMFTELFGTAYR YSGAGVGYQVASVVGGGFTPFIAVLLVEFMDGSWHAVAAYLAIGCLLSAVVGMGMKAPSDDTVPH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_1067 | YP_853084.1 | shikimate transporter | Not tested | PAI IV APEC-O1 | Protein | 9e-139 | 72 |
