|
Name : ECA4142 (ECA4142) Accession : YP_052229.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : RHS accessory genetic element Function : - COG functional category : S : Function unknown COG ID : COG3501 EC number : - Position : 4624416 - 4626443 bp Length : 2028 bp Strand : + Note : Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 1.5e-106, 47.15% id in 615 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 4.8e-124, 51.84% id in DNA sequence : ATGGCAAACAGTACAGGATTACAGTTCACCGTAAAGGTTGGCGCTCTGGAGGCTGGCACTTTTGCGGTGGTGGACTTCAG GCTGGATGAGGGGTTGAATTGCCCCTTCAGCCTGTCGCTGAGTCTGGCGAGCGCGTTGCCGGATGTGGATTTTGGTGCGG TGCTGGACCAGCCGTGCGAGCTGATGATTTGGTATGAGGGCGAGTTAAAACGCCGAGTCAGCGGGATTATTAGTGGATTC ACGCAGGGTGACACCGGATTTCGGCGCACGCGCTATCAGGCGGAAGTCCGTCCGGCGCTGTGGCGACTGGGTCTGCGCAC CAACGCCCGCATCTTTCAGGCGCAGAAGCCGGAAGCGATTATCGGTGCATTGCTGGAAGAAGCAGGCGTTACCGACTACG CCTTTGCGCTGCGCCATGAGCACGCGGTGCGGGAATACTGCGTACAGTATCGGGAAAGTGATTTAGCGTTTATCACCCGA CTGGCGGCGGAGGAAGGTCTGTACTTCTTCCACGAGTTCGAGGAAGGCAAGCATCGGGTCGTGTTTGCCGATGATGCGGG GGCGCTGACCAAAGGGCCTAAGCTGTTCTTCAATCTGGCGACACAGGGGTTAAGTGAGGGCGAATATGTCCGGCGTTTCC ACTACGCGGAGCGAGTGAGCACGGCCGAAGTGGAACTGAAGGACTACAACTTCAAGACGCCGGCTTACGGGCTGTCACAC AAGAAGATGAGCGGTGAGCTGGCGCACCAACGTGAAAGTTATCAGCATTACGACTATCCGGGGCGCTATAAACAAGACCC GAGCGGCAAGGCGTTCAGCGGTTACCGGCTGGATGCGCTGCGGTCAGGGGCGGTGACAAGCGAAGGGGAATCCAACTGCG CGGGGCTGATGCCGGGCAATACCTTTACCCTGACGGAGCACCCGAATGCGACGCTGAACGCGGTGTGGCAGACGGCGAGC GTGACGCACGTCGGGCAGCAGCCGCAGGCGCTGGAAGAGGAAAGCGGCGGCGAACCGACAACCATAAGCAACAGTTTTGC GGTGGTGAAGGGCACAACGACGTGGCGCGCTGCGATGCCGTACAAACCGATGGTGGACGGCCCGCAAATCGCGACGGTGG TCGGTCCGGCGGGTGAAGAGATTTACTGCGACCCGTACGGTCGGGTAAAACTGCAATTCCCGTGGGATCGCTATGGCGCG AGCAACGACCAAAGCTCTTGCTGGGTGCGCGTCAGTCAGGGCTGGGCGGGTGGCCAATACGGCATGATCGCTATCCCACG CATCAGCCATGAAGTGATTGTCAGCTTCCTCGAAGGTGACCCAGACCAGCCGATTATCACCGGGCGTACGTTCCACGCGA CCAACCGTCCTCCTTACGACCTGCCTGCGCACAATACGCGTACCGTGCTACGCACGGAAACTCATCAGGGTGAAGGATTC AATGAGCTGCGCTTTGAAGATCAGGCCGGGCAGGAAGAAATTTATATTCACGGGCAGAAAGACCTGAACGGCCTGATTGA GAACGATGTTGTCTGGCACATCAAACATGATGCCCACACGGATATTGATAATGAGCGGGTAACGCGAATCAAAGCCAACG ATCACCTGACGGTCGAGAACGAGAAACGTGATCATGTTAAAGGGGATTACTCACTGAGCGTCGATGCCTCGATGCACCAG AAACTGGGGCAGGCTTTGCTGGTTGAGGCCGGACAAGAGGTTCATCTTACATCTGGCAACAAGATAGTGCTGGAAGCCGG GGCTGAACTGACGCTCAAAGTGGGTGGCAGCTTCGTGAAGATTGATCCCAGTGGCGTGACGCTGGTTGGCCCCAGCATCA AGATGAATTCAGGCGGCAGCCCCGGTTTTGGTTCTGGCTGGGCAGGTCAAATGCCCACCTTTCCGGGGGCGGTTGAGGTG GTTAAAGCGCCCCAACCGCCACAGGTGCCACCTCTTGAAAAACCAGTCTGTATTCCCTGTCTGCTACGCGCCATGGCGCA GGGCGATGCGTTGGTTCAGGGAGAATAA Protein sequence : MANSTGLQFTVKVGALEAGTFAVVDFRLDEGLNCPFSLSLSLASALPDVDFGAVLDQPCELMIWYEGELKRRVSGIISGF TQGDTGFRRTRYQAEVRPALWRLGLRTNARIFQAQKPEAIIGALLEEAGVTDYAFALRHEHAVREYCVQYRESDLAFITR LAAEEGLYFFHEFEEGKHRVVFADDAGALTKGPKLFFNLATQGLSEGEYVRRFHYAERVSTAEVELKDYNFKTPAYGLSH KKMSGELAHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTSEGESNCAGLMPGNTFTLTEHPNATLNAVWQTAS VTHVGQQPQALEEESGGEPTTISNSFAVVKGTTTWRAAMPYKPMVDGPQIATVVGPAGEEIYCDPYGRVKLQFPWDRYGA SNDQSSCWVRVSQGWAGGQYGMIAIPRISHEVIVSFLEGDPDQPIITGRTFHATNRPPYDLPAHNTRTVLRTETHQGEGF NELRFEDQAGQEEIYIHGQKDLNGLIENDVVWHIKHDAHTDIDNERVTRIKANDHLTVENEKRDHVKGDYSLSVDASMHQ KLGQALLVEAGQEVHLTSGNKIVLEAGAELTLKVGGSFVKIDPSGVTLVGPSIKMNSGGSPGFGSGWAGQMPTFPGAVEV VKAPQPPQVPPLEKPVCIPCLLRAMAQGDALVQGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vgrG | AAN64196.1 | VgrG | Not tested | macrophage toxin pathogenicity island | Protein | 2e-139 | 47 |
| aec15 | AAQ96709.1 | Aec15 | Not tested | AGI-1 | Protein | 6e-116 | 41 |
| aec15 | YP_851429.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 8e-116 | 41 |
