Gene Information

Name : ECA0057 (ECA0057)
Accession : YP_048186.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 73530 - 74042 bp
Length : 513 bp
Strand : +
Note : Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.2e-25, 46.38% id in 166 aa

DNA sequence :

ATGGTGAGGAAAGCGACGGCCAGCGTGAATGACTTTGCCCAACAGCTCTATTTCGATCATCACCGCTGGTTGTATAACTG
GCTGCGCCATAAACTGGATTGTTCCCAGAATGCGGAAGACTTGGCACAGGATACGTTCCTTAGTGTGCTGATGAACCCGG
AGTTGCTCACGATTCGCCAGCCGCGCCCGTTTCTGGCCACCGTGGCCCGCCGTTTAGTCGCCAATCATTATCGTCGTAAA
AAAATTGAAGATGCCTATCTGGATGTGTTGAGCACGCAGCCGGATGCCTGTATGCCTTCCCCGGAAACGCGTCTTCTTAC
CCTCGAAATTCTTGAACAGCTTGATGCTGCACTGGATGGCCTGCCAGCGCCAGTCAGAGAGGCGTTTCTGCTGGCACACC
TCCACGGTATGCGCTACAGCGATATCGCCGAGCGTTTACGCGTTTCCAGCAGTTCAGTGAAACAGTATCTGCAACGCGCC
AACCTCCAATGTTTCTTTGCTTTGCCGCTATGA

Protein sequence :

MVRKATASVNDFAQQLYFDHHRWLYNWLRHKLDCSQNAEDLAQDTFLSVLMNPELLTIRQPRPFLATVARRLVANHYRRK
KIEDAYLDVLSTQPDACMPSPETRLLTLEILEQLDAALDGLPAPVREAFLLAHLHGMRYSDIAERLRVSSSSVKQYLQRA
NLQCFFALPL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	8e-35	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
ECA0057	YP_048186.1	ECF family RNA polymerase sigma factor	VFG1049	Protein	3e-35	47