Gene Information

Name : ECA0813 (ECA0813)
Accession : YP_048923.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 901717 - 902241 bp
Length : 525 bp
Strand : +
Note : Similar to Bordetella avium RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 5.1e-26, 45% id in 160 aa, and to Escherichia coli probable RNA polymerase sigma factor feci feci or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E()

DNA sequence :

GTGAAGAGTCCTGCCGCTGCCTGCCCTCATCAGCCTGAAACCTTAAATGTTCAGCAGATTTATCATGACCATCATGCTTG
GTTACAGGCATGGTTGCGTCGGCGTTTGGGATGTTCACTGCAGGCGGCGGATCTGGCGCAAGACACGTTTCTACGTTTGA
TTTGCCAACATCAGACCGATCACATTCGTGAACCGCGTGCCTGGCTGACGACCGTGGCCCACGGGCTAGTGGTTAACCAC
TGGCGACGTAAAGACATTGAGAATGCCTACCTCCAGGTGCTAGCTGAGCAAGAGTTTAACTTTTCCCCTTCGCTGGAGCA
TCAGGCCATTGTGGTGGAGGCGCTGCTGGCCATCGACCAGATGCTGGCGATGCTGCCTGTTAAGGTGCGTCAGGCATTCT
TGCTGGTGCATCTTGACGGCTTGACCTATCGGCAGGTTGCTGAACAATTAGCCGTTTCCGAGCGGATGGTAAAAAAATAT
ATGGCACAGGCAATGCTGAATTGTCTATTGTGTCAGGACTTATGA

Protein sequence :

MKSPAAACPHQPETLNVQQIYHDHHAWLQAWLRRRLGCSLQAADLAQDTFLRLICQHQTDHIREPRAWLTTVAHGLVVNH
WRRKDIENAYLQVLAEQEFNFSPSLEHQAIVVEALLAIDQMLAMLPVKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKY
MAQAMLNCLLCQDL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-31	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
ECA0813	YP_048923.1	RNA polymerase sigma factor	VFG1049	Protein	3e-31	43