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Name : secD (PD0182) Accession : NP_778426.1 Strain : Xylella fastidiosa Temecula1 Genome accession: NC_004556 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 231740 - 233605 bp Length : 1866 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTCGCCCGAGACTTGCGCAATGCTTGAATTACCCCGTTGGAAATATGTTCTTATTTTTGTTGTGCTTGTGTTGAGCAC GCTGTACGCGTTACCAAACGTGTATCAGAAAGATCCTTCCGTGCAGATTACCGCCAATCGAGGCGGCCATATCGACGATG CATTCCGCCAGCAGGTGATGACTGATCTTCAAGCATCCGGCATTGTGCCTAAGGCCGTGACCAAGGAGGGGGAGAGCCTG ATGGTGCGCTTGATGTCGTTGGAGATGCAGACCCGTGCCAGCGATGTGTTGCGGGCTAAGGTGGGTGAGAATTACACCGT TGCATTGAATCTCGCTTCCACTGTGCCAGATTGGTTGGCTAAGTTGGGTGGGCGACCGATGGTGTTAGGTTTGGATCTGG TTGGCGGTGTGCATTTCGCGCTTCAGGTGGATCAGAAGGCCGCTCTGAATAAACGTATGGATGCTTTTGTTGAGGAGGTA CGTTCGACGTTGGGTAGCAAGCGTATTGGCTTCCGCATGGTCGAACGCCGTCCGGACAACACGATTCGAGTGACGTTTGA TGATGATGCTCATCTCAATGAAGCACGTATGGTGTTGTTTAAGGAGCAAGTGGGGCTGAGTTATTCGGTATCCGGAAATA CTTTGATTGCTCGTGTTTCTGAGAATGAGTTGCGTCAGATTGCCAGTGGTGCGGTTGAGCAAAATTTGACGACTCTGCGT AATCGCATCAATGAATTAGGCGTGGCCGAACCAATTATCCAACGTCAGGGGGATGATCGTATTGTTGTTGAGTTGCCTGG TGTTCAGGATACTGCTGAGGCTAAACGTCTGATAGGTGCGACTGCTACGCTGGAGTTTCGGGGTGTGGTCGACGGTGATG CCTATGAGGCAGTCCGTACTGGGAATGTTCCTCCTGAGGCCAGGGTGTATTACATACGCGGCACCAACCAGCCAGTTTTA TTGAATAAGCGTGTGATTGTTTCTGGTGATGAGATGGTGAATGCCACTGTCGGTGTGGATGAGAACGGCATGCCAGCGGT CAATGTCACCCTCAGTAATGCTGCTGGTCAGCGTATGTTGGACTACACCCAGCGCAACCTTTACAAGCTGATGTCTGTGG TCTACATCGAGCGTATTCCGACTGTGAGCATGGTTGATGGTAAGGAAGTGCGTGGCGTGCGGTTGAAGGAAGAGGCATTG TCCCCAACACGGATTGCTGGGGTATTTGGAAAAAACTTCCGTACCACCGGGTTGGAGAAGACTGAGGCTGAAAATCTGTC TAAATTGTTGCGCGCTGGTTCGTTGGCTGCACCGATGGATTTCGTTGAGGAATATGTGATCGGTCCTAGTTTGGGTGCAG AGAATGTAGAACGTGGTGTGACTGCAGTGGTGTTTTCTTTCTTATTCACCCTGGTGTTTTTCACCATCTATTACCGCATG TTTGGTGTGATTACTTCATTGGCATTGCTGTTTAATCTGTTGATTGTGGTAGCTGTGATGTCGCTGTTTGGTGCAACCAT GACTTTGCCGGGTTTTGCCGGGTTGGCGCTGTCGGTCGGGCTTTCGGTGGATGCTAACGTGTTGATCAACGAGCGTATCC GTGAGGAGTTGCGTCACGGGATGCCTCCGAGATCGGCGATTGTGGCCGGTTACGACAAGGCGGGTAGCACGATTCTTGAT GCCAATTTGACCGGACTGATTGTTGGTGTTGCCTTGTATGCTTTCGGAACCGGTCCTTTGAAGGGCTTTGCGTTGACTAT GATTATCGGGATTTTCGCCTCAATGTTTACTGCGATTACGGTATCGCGTTCGCTCTCTGCGCTGATTTACGGTACGCGCA ACAATCTCAAGTCTTTGGCTATCTGA Protein sequence : MSPETCAMLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASGIVPKAVTKEGESL MVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEV RSTLGSKRIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLR NRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVL LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEAL SPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRM FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILD ANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSLAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
