Gene Information

Name : PSPTO_1203 (PSPTO_1203)
Accession : NP_791035.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma-70 family protein
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1316530 - 1317072 bp
Length : 543 bp
Strand : +
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCGCGACTTTTCCGCCGTTGATGATGACGCCAGTCGTCGCCAACAAATGACCGAGCTCTACGTCGACCACCACTCGTG
GTTGCAGAACTGGCTGCGGAAAAAACTGGGCTGCTCGCAGCGTGCAGCCGATCTTGCTCATGATGCTTTCGTTCGAATTC
TTACCCTGACCGAGCCGCTCAACCTCAAGGAACCGCGCGCTTTTCTGTCGACCACGGCCACCCGTCTGCTGATTGACGGT
GCCCGCCGCCGCAAGGTCGAACGCGCTTATCTGGATGCGTTGGCGCTGCATGCCGACGAGGCGAGCATTCCCAGCCCTGA
AGCCATTCACGCCGCGCTGCAGATACTCGAGCGAATCGCCCGGTTGCTTGAAGGTCTGCCCGAAAAACCGCGGCAGGCCT
TCTTGCTCCACCGTCTCGATGGTCTGACGTACAGCGAAATCGCCACTCATTTGGGGGTGTCCTCCAGCATGGTCAAACAG
TACATGGCCAGCGTCATGGTGCATTGCTACAAGGCACTGCATGGTTCGGGCCATTTTGCATGA

Protein sequence : 
MRDFSAVDDDASRRQQMTELYVDHHSWLQNWLRKKLGCSQRAADLAHDAFVRILTLTEPLNLKEPRAFLSTTATRLLIDG
ARRRKVERAYLDALALHADEASIPSPEAIHAALQILERIARLLEGLPEKPRQAFLLHRLDGLTYSEIATHLGVSSSMVKQ
YMASVMVHCYKALHGSGHFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-32 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1203 NP_791035.1 RNA polymerase sigma-70 family protein VFG1049 Protein 7e-33 46