Gene Information

Name : PSPTO_1209 (PSPTO_1209)
Accession : NP_791041.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma-70 family protein
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1325302 - 1325808 bp
Length : 507 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence :

GTGATGCACATCGCCCACTCCGCTCCCAATCACACTGTCGAAGGCCTGTATCGGGCGCATAACGTCTGGCTGACGACCTG
GTTGCGGCGCAGGCTCGGCTGCCCCCACAGCGCAGCGGACCTGGCGCAGGACACCTTCGTCAAAGTGCTGGGCGCACGCG
ATACCGCGCAGATCATCGAGCCTCGCGCCTTTCTGACGACCATCGCCAAACGCGTGTTGTGCAACCACTACCGGCGTCAG
GACCTGGAGCGTGCCTACTATCAGGCACTGGCAGAGCTGCCCGAGTGTGCAGCGCCTTCGGAAGAAGAGCGGGCGATCAT
TCTTGAAACGCTGGTGGAGCTGGATCAGTTGCTGGACGGCCTGCCAGCGCTGGTCAAACGTGCGTTTCTGATGTCGCAGG
TCGATGGCCTGAGCCACGGCCAGATCGCCGCCGAGCTGGATATTTCCATCGCGACGGTCAAACGCCACCTGAACAAGGCC
GCGCTGCGCTGCTACTTCGCCTTATGA

Protein sequence :

MMHIAHSAPNHTVEGLYRAHNVWLTTWLRRRLGCPHSAADLAQDTFVKVLGARDTAQIIEPRAFLTTIAKRVLCNHYRRQ
DLERAYYQALAELPECAAPSEEERAIILETLVELDQLLDGLPALVKRAFLMSQVDGLSHGQIAAELDISIATVKRHLNKA
ALRCYFAL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-33	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSPTO_1209	NP_791041.1	RNA polymerase sigma-70 family protein	VFG1049	Protein	5e-34	47