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Name : hrpH (PSPTO_1378) Accession : NP_791205.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : membrane-bound lytic murein transglycosylase D Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG4623 EC number : - Position : 1519724 - 1521211 bp Length : 1488 bp Strand : + Note : see PMID: 17827286; see PMID:20190049 for expression data DNA sequence : ATGCCCGCCGTCGCCTTCCCCGTATCGAGCCCACGCTTGCTGGCTCGCGCTGTTCAAATCGCAGTCCTCGCTATGGGCGC CTTGTGTGTGGGCTGCCAGTCTGTGGACTATTCGCCGCCGCGTCAGGACCGTCCGCCGCGGCTGGTGTCGGGGCTGGTCT ATTGGGGGGGAGATGATAAGGAAGGTTCGCGGGCTGCAGACAAAATCTCCGATCTGCCTGTTTATAACGGCGAGGACGTG TGGCAGCGGGTTGCCCAGCGCTGCAGGCTGGTCGATGGCCAAGGCATGAATGAGCGTATCGCTCGCCAGCGCGACTGGTT GCTGAGCAATCGCGGATTTATCACGGGAGCCAGTGTCCGGGCCAGCCCTTATCTGCATTTTATTGTCGAGCGCCTGGACG AGCGCAACATGCCGCTGGAGCTGGCACTGCTGCCGATGATCGAAAGCTCTTATAACCCCATGGCCAACTCTCCGGCCGCT GCGGCAGGTTTGTGGCAATTCATTCCATCCACGGGGCGCAGCTTCAATCTGCATCAAAGCGCGACCTACGACGCTCGCCG TGACGTGGTGGCCTCCAGCAAGGCGGCGATGGATTACCTGACCCGCTTGCATGATCAGTTCAATAATGACTGGCTGCTGG CGCTGGCCGCCTATAACGCGGGGGAGGGCACCGTCGGTCGGGCGATTGAGGCCAACCGACGGCGTGGTCTGCCTGTGGAC TACTGGAATCTGAATTTACCCAAGGAAACCCAGGATTACGTGCCCAGACTGTTGGCGCTCTCAATGGTTGTGCGCAACCC CAATGCCTACGGTGTGAAACTGACCCCGGTCGCCAACACGCCGTATTTTGACGTAGTCGAGCTTAACCATGCCGTAGACC TGACCCAGCTCGCGGCCACGGCGGGTGTGGATGAGGGCCAGTTGTTGCGGCTGAACTCGGCATTCCTGCGCAAAAAGACC TTCGATGGACCGGGACGTCTGCTGATACCTAAAACCCAGAATCGCGTGCTCACGACCAGCATCGCGCGCATTACCGGTGA GTCCCCGGTGACTGCCAGCATCCCGCTGGTCACCCCTTCAGCCATTGTGAAACGGGCGGCTGAGCGTCTGCCCGCGCCCG CGCCTGTGGCTGAGCGTCCAGTGCGCGTTGCAGAGCGTCCGCCGCTGCCCAAGCCCGTGCAGTCGGCCCAGTTAGCCGAG AACCTGCCTTCGCCCAAAACGGCTCAGCCGTTGCCGGTGGCTCAGCAGCCCACTGCGCCTGAGGCGTTACAGCCAGCTCC TGCAGCTGAATCAGCGCCGGCGGTAGAGATCGCCCAATCCGCACCTGTTGTGGAACCTGATCCGCTTACAAACCGGATAC AGTTGCCCCGCATCAGGGATGACCGTTCGTCGCCTCGCAAGCGTGATGACGACGAGTATCGCAGCGGTCCGCGCGAGCTG CCTACGGGGCCGCGCGTCGTGGTTTTTGCCAGTGATCCACGCCAATAA Protein sequence : MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDKEGSRAADKISDLPVYNGEDV WQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVRASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAA AAGLWQFIPSTGRSFNLHQSATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAATAGVDEGQLLRLNSAFLRKKT FDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPSAIVKRAAERLPAPAPVAERPVRVAERPPLPKPVQSAQLAE NLPSPKTAQPLPVAQQPTAPEALQPAPAAESAPAVEIAQSAPVVEPDPLTNRIQLPRIRDDRSSPRKRDDDEYRSGPREL PTGPRVVVFASDPRQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpH | NP_791205.1 | membrane-bound lytic murein transglycosylase D | Virulence | Hrp PAI | Protein | 0.0 | 100 |
| unnamed | AAF71498.1 | unknown | Not tested | Hrp PAI | Protein | 0.0 | 100 |
| unnamed | AAT96217.1 | membrane-bound lytic murein transglycosylase-like protein | Not tested | T-PAI | Protein | 3e-135 | 64 |
| unnamed | AAT96163.1 | membrane-bound lytic murein transglycosylase-like protein | Not tested | T-PAI | Protein | 4e-135 | 63 |
