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Name : secD (PSPTO_1415) Accession : NP_791241.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1554625 - 1556493 bp Length : 1869 bp Strand : + Note : see PMID:20190049 for expression data DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATACGTACTGATCCTGGCGGTGCTGGTGGTCGGTTTCATTTATTCCGCACCCAA TCTCTACCCTGATGATTCTGCCATCCAGATCAGCGGCGCGAGCACTGCGCTGCAAGTCAATCAGGCAGACGTGGATCGTG CAGCCAAGGCGCTTACCGATGCCGGCATCTCGGTCAAGGCTTCTTCTCTGGCCGAGAATGGCAAGGGCGGTTTGTTGCGT CTGAGCAAGCAGGAAGATCAGTTACCAGCCAAGGATGTCGTGCGCAAGGCGTTGGGTGATGACTATGTCGTCGCACTGAA CCTGGCGCGCACCACGCCGACCTGGTTGCGCAACCTGGGCGCAAGCCCGATGAAGCTCGGTCTCGACCTGTCCGGTGGTG TGCACTTCCTGCTGGAAGTCGACATGGACAAGGCGATCGATGCGCGTCTGAAAGTCTACGAAGGCGAAGTCAAATCCCTG TTGCGCAAGGAAAAGGCGCGTTATCGCAGCCTGCCGCAGCTGGGCAACGTGATTCAGCTGGGCTTTACCGATGATGCAGA GCGCGAGCAGGCTCGTGCACTGGTGCGCAAGACCTTCACCGATTTCGAAATCACGCCTGCCGAGCTGAACGGTATTCCCG TACTGCGCATGGCGCTGACCCCGGCCAAACTGGCCGAGATTCGTGAATACTCGATCAAGCAGAACCTGACCACCGTCCGT AACCGGGTCAATGAGCTGGGTGTTGCCGAGCCGCTGGTTCAGCGTCAGGGTGCCAACCGCATCGTGGTCGAGCTGCCGGG TGTGCAGGACACGGCCGAAGCCAAGCGTATTCTGGGCAAGACCGCCAACCTCGAGTTCCGTCTGGGCGCAGGCCCGGATG ATTCGAAGGGCACCACCGAAATGTTCGAATTCCGCGAAGGCGGACGTCCGGCAGCGGCAGTGGAGCGTGGTCTGATCATC ACCGGCGACCAGGTGACTGACGCCAAGGCCAGTTTCGACGAGCACGGCCGTCCACAGGTGAACATCAACCTTGATGGTCA CGGTGGCGAACTGATGAGTCGCGCAACCCGCAGCAATGTGGGTCGCAGCATGGCGGTGATCTTCATCGAGCAACGTCCGA CCACCACCTACACCAGGCAGATGGTCAACGGCGTCGAAAAAGACGTGCCGGTGCAGACCTTCAAGGAAGAAAAGAAAATC ATCAGCCTGGCGACCATCCAGTCGCCGCTGGGCAGTCAGTTCCGGATTACCGGTCTGAATGGTCAGGGTGAGTCTTCCGA GCTGGCGCTGCTGTTGCGCGCGGGTGGTCTGGCCGCGCCGATGTACTTCGCTGAAGAGCGCACCATCGGTCCGAGCCTGG GTGCCGACAACATCACCAAGGGTATCGACGCTTCCCTGTGGGGCATGCTGTTCGTATCCATCTTCATCATGGCGATCTAC CGCTTCTTCGGTCTGATCGCTACCGTTGCCCTGGCCCTGAACATGGTCATGCTGCTGGCGCTGATGTCCTTGCTGGGTGC CACACTGACCCTGCCGGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTGGATGCCAACGTGTTGATCTTCTCGC GGATCCGTGAAGAGATCGCCAATGGCATGACGGTGCAACGCGCTATCAACGAAGGTTTCGATCGTGCCTACACGGCGATC CTCGACGCCAACCTGACGACGCTGCTGGTCGGCGGCATTCTCTTTGCGATGGGCACCGGCCCGGTCAAAGGGTTTGCGGT GACCATGTCGCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCTATGGTCAACCTGATCTACGGCG GTCGTGACTTCAAGAAGTTGTGGATTTAA Protein sequence : MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALTDAGISVKASSLAENGKGGLLR LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL LRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFEFREGGRPAAAVERGLII TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEEKKI ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAI LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
