Gene Information

Name : ssaQ (t1286)
Accession : NP_805089.1
Strain : Salmonella enterica Ty2
Genome accession: NC_004631
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 1352114 - 1353082 bp
Length : 969 bp
Strand : +
Note : corresponds to STY1702 from Accession AL513382: Salmonella typhi CT18

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACACAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATTGAGCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAGCCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGTCAACAGATTTATCCTGCTCCTCCTGTGGTA
GTCCCTGTATATTTAGGCTGGTGTCAGCTTACATTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGTATTTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGACGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGCCCGATGTTAAAGAGTGAT
GGAACGTCTTCAGTCGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATTGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGCGGATGTTTTGCGCCAGAAGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGGAATGAATTCATGGTACGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 2e-143 100
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 2e-143 100
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 3e-142 99
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 6e-143 99
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 5e-98 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaQ NP_805089.1 type III secretion system protein VFG0518 Protein 1e-142 99