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Name : secD (NE1143) Accession : NP_841200.1 Strain : Nitrosomonas europaea ATCC 19718 Genome accession: NC_004757 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1239915 - 1241762 bp Length : 1848 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGCTACCCCCTCTGGAAATATATCGTCATCGCCGTTTCAATACTGCTTGGATTGCTGTATACCCTGCCCAACTT TTTTGGTGAATCTCCCGCCGTCCAGATTTCACCCTTGCGGGCCGGCATTCAAACCGATATGGCCCTTCTGCAGCGTGCTG AACAAGTACTCAAACAGCATGGTCTCCCCTACAACGGAACGATACTCGAATCCACCGGAATCAAGATCCGGTTTTCCGAT ACCGATACCCAGATCAAAGCGCGGGATATTCTGGATGCTGAAGTGGGTAGTGATTACATCGTTGCCTTGAACTTGCTGCC GAATTCCCCTCAGTGGATGCGTCATATTGGTGCGCTGCCCATGTATCTGGGCCTCGACCTGCGGGGAGGTGTCCACTTTA TGCTGCAGGTGGATATGGCAGGAGCATTGACCAAGGCACTCGACCGTTACAACGCCGATCTGCGCAGCACTTTGCGCGAA CAGAGAATTCCTTCAGCCGGCATTGACCGGGATCGTTCGAGAATCATCATCAAATTCCGTGATGAACAGGCGCGTGAAAA AGCAATTTCTGAACTGGGAAAAACCTTTGAAGATCTCGCTTTTCGGTCGGAAGATGTCAACGGAGAGCGGCGCCTGGTTG CCTCGATCAAGCCTGAAGCACTGATACGCATGCAGAATACGGCAGTTCAGCGCAATATCACCACTCTGCGCAACCGGGTG AATGAGCTGGGCGTGGCAGAGCCGATCATCCAGCAGGCAGGCGCCGACCGGGTGATCGTGCAGTTGCCGGGTGTGCAGGA TACCGCCAAGGCCAAGGATATTCTGGGCAGAACCGCCACACTGGAAGTACGCATGGTCGACGAGGACGGCGATATCGATG CCGCATTGCGCGGATCAGTACCTTCCGGGACTGAACTGCTTTCCGAGCGTGGAGGAGGACATCTGCTGGTCAAAAAACAG GTATTGCTCACTGGTGATCGCATCACGGATGCTCAACCCGGTTTCGATCAGGACAGACAGGCCGCCGTCCACGTTACCCT GGATAACAACGGTTCACGAATTTTCAAGCAGCTGACACGTAATAACGTAGGTAAGCGTATGGCTATCCTGCTGGTAGAGA AAAATGTGACTGAAGTCGTCACCGCTCCGGTCATCCGGGAAGAAATCGGTGGTGGGCGTGTACAGATCAGCGGACAGATG AACAGTATCGAAGCACGTGACGTAGCCTTGCTGTTACGTGCCGGTGCTCTGGCTGCGCCCATGGAAATCATCGAGGAGCG TACCGTCGGGCCAAGTCTCGGCGCTGAAAACATAGAAAGAGGATTCAATTCGACTCTGTATGGCTTCCTGATCGTATCCG TATTCATCATGATTTATTACTCGGCTATCGGTGTCATCTCTGTCGTGGCACTCGCTACCAACTTGTTGTTTCTGATCGGA TTGCTTTCGATCTTACAAGCTACACTGACACTCCCCGGAATGGCTGGAATGGCGCTGACCGTGGGGATGGCAATCGATGC CAACGTACTGATCAACGAACGGATCCGCGATGAATTACGGCATGGCGCCACACCCCAGGCTGCTATCCATGCCGGGTATG AGCGTGCATGGGATGCAATTATCGATACGAACCTCACCACATTACTCGCCGGTCTCGGTCTGATGATGTTTGGTAGTGGG CCGATAAAAGGCTTCGCCGTCGTATTGTGTCTGGGAATTCTGACCACGCTTTTCAGCGCTGTCACCGTTTCGCGCGCAAT GGTCAATCTGTTTTACGGAAATCGTAAACTGACGCATGTCCCGATCGGAGCCATCAAAATACTGAAAAAAAGCAGCAGCA AACGTTAA Protein sequence : MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRAGIQTDMALLQRAEQVLKQHGLPYNGTILESTGIKIRFSD TDTQIKARDILDAEVGSDYIVALNLLPNSPQWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKALDRYNADLRSTLRE QRIPSAGIDRDRSRIIIKFRDEQAREKAISELGKTFEDLAFRSEDVNGERRLVASIKPEALIRMQNTAVQRNITTLRNRV NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEDGDIDAALRGSVPSGTELLSERGGGHLLVKKQ VLLTGDRITDAQPGFDQDRQAAVHVTLDNNGSRIFKQLTRNNVGKRMAILLVEKNVTEVVTAPVIREEIGGGRVQISGQM NSIEARDVALLLRAGALAAPMEIIEERTVGPSLGAENIERGFNSTLYGFLIVSVFIMIYYSAIGVISVVALATNLLFLIG LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDELRHGATPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMMFGSG PIKGFAVVLCLGILTTLFSAVTVSRAMVNLFYGNRKLTHVPIGAIKILKKSSSKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-102 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 9e-103 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-103 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-103 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-103 | 42 |
