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Name : rpoB (RB5414) Accession : NP_866682.1 Strain : Rhodopirellula baltica SH 1 Genome accession: NC_005027 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2794930 - 2798715 bp Length : 3786 bp Strand : + Note : PMID: 6266829 best DB hits: BLAST: swissprot:Q9Z9A0; RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN; E=0.0 pir:F81548; DNA-directed RNA polymerase, beta chain CP0694 [imported]; E=0.0 ddbj:BAA98291.1; (AP002545) RNA polymerase beta [Chlamydophila; E=0. DNA sequence : GTGGGCGGATTCCGGGCTGTGTTGGTGTTTTTGTTCTTCCCCGCGAAGGAGCTCCCACTCACGATGGCAACTACGACTCA GCGTCGCCTCGAACCCACCTCGATTCGCAAATTCGGCACCGGCTTGGGCCAGTTCGATTTGCCCGACCTGACCGCCCTGC AAACAGTGTCCTACGCGGCATTCTTGCAAGAAGATGCGGCCAGCAACGCTCGCAAAGATCACGGGCTGGAGTCCGTACTG AGGGAAATTTTCCCGATCGCCAGTTACGACGGGAATACGACGCTGGAGTACCTGTACTACGAGCTGGGGAAACCCCGCTA CACAATTCAGGAATGCCGTCAGCTGCGTTTGACCTATGGTCGTCCGCTGCGTATTTGGTTGCGTCTGAATCGCGAAGAGC CCATCGAAGAAGAAGTCTATCTGGGCGACCTGCCAATCATGCTGGGCGGTGGTGAATTCATCATCAACGGTGCTGAGCGT GTTGTCGTGTCGCAGTTGCACCGCAGTCCCGGTGTCGACTTCGTTCTGGAACAAGACACCACGACCGATCGCAAGTTGCC ATCGTGCCGCGTGATCCCAGAACGCGGCTCGTGGATCGAAGTCAACGTGACCAAGAAAGATGCGTTGACGGTCCGCATTG ACCAAAGCGGCAAATTTGCCGCGACCATGTTGCTGCGTGCAATGGATCCCAAGTACAGCACCGACGCAGATTTGTTGTCG GCTTTCTACGAAACCGGCACCATCAAGGTGAACGGTGGGAAAGACGCGACCAAGATCGAGAACAAGATCGCCGTCGACGA TGTGGTTTACCCCAGCGGTCACGAACGTGCCGGCGAAATCATCGTCGAAGCTGGCTACAAGATCACCACCGAACTTTCGG AAACGATCTGCAACGCTGGCGTGACTTCGGTCGAAGCAATGGACCTGCCAAAGGTACCGTTGATCTTCAACACGCTTGCC GACGACAACACCGCCAGCCACGAAGAAGCGTTGCTGCGGATCTATCAGCGTTTGCGTCCCGGCAACCCGCCTCAGCTGGA AAAAGCTCGCACGCTGTTCCAAGAAAAGTTCTACGACGACAACCGTTATCGATTGGGCAAAGTCGGCCGTTTCCGCCTGA ACCGCAAGTTGGGTCTCGGCGTCGAAGAAACCGTCATGACGTTGCGTCCTGACGACATGATCGCTGCCATCCGTTACCTG ATCGACTTGTTCGACGCGGACAGCGGTGCGGAGATCGACGACATTGACCACTTGGGCAACCGTCGTTTGCGTACCATCGA TGAACTCGCCAGCGAAGAACTCCGCAAGGGTTTCTTGAAGCTGCGTCGTACGGTTCAAGAACGCATGAGTGTCAAAGACG CTCAAGACATGACGCCTCGTTCTTTGATCAACCCCAAGAGCGTTTCAGCAGCAATCGACTTCTTCTTCGGTCGTGGCGAA CTCTCTCAAGTCGTTGACCAGACGAACCCATTGTCGCAGTTGGCACACGAACGTCGCTTGTCGGCTCTCGGCCCTGGTGG TTTGAACCGGAAACGTGCGGGCTTCGAAGTTCGCGACGTGCACATTTCGCACTACGGTCGTATCTGCCCGATTGAGACTC CCGAAGGTACGAACATTGGTCTGATCAGCTCGTTGGCAATTTATGCTGGCGTCGACGATTACGGATTCCTTTGCACACCT TTCCGCAAAGTCATCGACGGCAAAATCAGCGACGAAACCGTTTGGTTGCGTGCCGATGAGGAAGGCGAATCCTACGTTGC ACCTGCTGACACCGAAGTCAAAGACGGTGCCCTGGTTCCCGGCCCCAACATGATCGCTCGTTTCCGCAGTGACTTCGAGA TCGTCATGCCGGAGCAAGTGTCCTTCATGGACGTGGCTCCCGCTCAGATGGTCGGTGTCTCTGCTGGCTTGATTCCTTTC CTGGAGCACGATGATGCAAACCGTGCTTTGATGGGATCGAACATGCAGCGGCAAGCCGTGCCATTGTTGGTCACCGAGCC GCCAATTGTCGGCACCGGGATGGAACGCGAAGTTGCAAAGAACAGTGCGATGGTCGTGCGTGCTCGCCGTGCGGGCAAAG TGACCTACGCAGATGCGACTCGTATCGAAATCGGTAGCGATCACTACCCACTGAAAAAGTACCAAGGGCTCAACGAACGA ACCTGCCAAAACCAAAAGCCACTCATCACGGTTGGTGACAAGGTCGAAAAAGGCCAAATCATCGCCGACGGTGCAGCCAC CCAAAAAGGTGAACTGGCTCTCGGACGAAACGTCTTGGTCGGCTTCATGTCGTTCGACGGATTCAACTACGAGGATGCGA TCATCATCAGCGAAGAGCTGGTGCGAAATGACACGTACACCTCGATCCACATCGAAGACTTCGACGTCGAAATTCGCGAA ACCAAATTGGGTCGCGAAGAATTCACGCGAGACATCCCGAACGTATCCGAGAAAGCACTTCGTAACTTGGACGACACCGG GATCGTTCAAACGGGAACTTACGTGAAGCCAGGCGATATTCTGGTCGGCAAGGTTTCACCAAAGAGCAAGACGGAACTGA CGCCGGAAGAAAAGCTCCTTCACGCGATTTTCGGTCGTGCTGGTGAAGACGTGAAGAACGATTCGTTGGAAGTGCCATCG GGCATCGAAGGCATCGTCATCGACACGCAGAAGTTCAGCCGCCGGATGAGTCTCGGCGAAGACGAGCGAAAGGCGTTCGA ACGCGAACTGAAGCAACACGAAACCGAAGGCAATGAAGAAATTGCCAGCACGTTTGAGTCGTTGATTCGTGACATGGAAG AGGCTTCCGGCGTCAAGCTGAAAGACTCGACCGGCACACCTTTGGCCGACGGACAAGATCCTAAGTTTGTTGCTGAACGT GCAACCAGCTTCCGATTGGAACTCGTCCTCGAGCAAATCGAAGACGAAGAGAAACGCAAAGCTGCCGAGAAGGTTCACCA AACTCAATGGCAAAACGTCGAGCAAGCCATCGACGAGCGTGATCGCAAACTGAACAGCATGAAACGCGGCGATGAACTTC GCTCGGGCGTGCTGCAGATGGTCAAGATCTACATCGCGACCAAGCGTACGATCAGCGTCGGTGACAAGATGGCGGGACGT CACGGTAACAAGGGTGTGATCGCCAAGATCCTGCCGATCGAAGACATGCCGTTCTTGCCGGATGGAACTCCAATTCAAAT CATGCTCAACCCGCTGGGAGTTCCCAGCCGGATGAACGTGGGTCAGATTTTGGAAACTCACCTGGGTTGGGCGGGAGCCA AGCTTGGATTCCAAGCACTCACGCCAATCTTCGATGGTGCCAGCGAATCGGAAATCAATGACTGCTTGGCGGAAGCCGGT TTGCCAGCTCACGGTAAGATCCGTTTGACCGATGGTCGAACCGGTGAGCCGATGGAGCAGGAAACCACCGTGGGCTACAT CTACATGCTGAAGCTTCACCACTTGGTTGACGACAAGGTCCACGCACGCAGCACCGGACCTTACTCGTTGATCACTCAGC AACCTCTTGGCGGAAAGGCTCGCTTCGGCGGTCAACGCTTCGGAGAAATGGAAGTTTGGGCACTCGAAGCATATGGTGCC GCTTACATTCTCCAGGAACTGCTGACGGTGAAATCCGACGATGTCGAAGGTCGAACCAAGATCTATGAATCGATGGTCAA GGGAGAAAACACTCTCGAGGCCGGCACACCTGCCAGCTTCGACGTGTTGACCAACGAAATTCGTGGTCTGGCCCTGAACA TGCAACTCGAGAAACGGCCGATCTAA Protein sequence : MGGFRAVLVFLFFPAKELPLTMATTTQRRLEPTSIRKFGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVL REIFPIASYDGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRLNREEPIEEEVYLGDLPIMLGGGEFIINGAER VVVSQLHRSPGVDFVLEQDTTTDRKLPSCRVIPERGSWIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLS AFYETGTIKVNGGKDATKIENKIAVDDVVYPSGHERAGEIIVEAGYKITTELSETICNAGVTSVEAMDLPKVPLIFNTLA DDNTASHEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVMTLRPDDMIAAIRYL IDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGE LSQVVDQTNPLSQLAHERRLSALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTP FRKVIDGKISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVAPAQMVGVSAGLIPF LEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVVRARRAGKVTYADATRIEIGSDHYPLKKYQGLNER TCQNQKPLITVGDKVEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDFDVEIRE TKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELTPEEKLLHAIFGRAGEDVKNDSLEVPS GIEGIVIDTQKFSRRMSLGEDERKAFERELKQHETEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAER ATSFRLELVLEQIEDEEKRKAAEKVHQTQWQNVEQAIDERDRKLNSMKRGDELRSGVLQMVKIYIATKRTISVGDKMAGR HGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAKLGFQALTPIFDGASESEINDCLAEAG LPAHGKIRLTDGRTGEPMEQETTVGYIYMLKLHHLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGA AYILQELLTVKSDDVEGRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKRPI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 44 |
| rpoB | NP_866682.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
