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Name : glcD (RB12039) Accession : NP_870286.1 Strain : Rhodopirellula baltica SH 1 Genome accession: NC_005027 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 6493268 - 6494713 bp Length : 1446 bp Strand : + Note : PMID: 8606183 PMID: 11283302 best DB hits: BLAST: pir:E82977; glycolate oxidase subunit GlcD PA5355 [imported] -; E=1e-102 pir:S74338; glycolate oxidase chain glcD - Synechocystis sp. (strain; E=1e-101 swissprot:P52075; GLCD_ECOLI GLYCOLATE OXIDASE SUBUNI DNA sequence : GTGAATCCCAGCGACCTGACTGGTTTGGCAGAGCTGTTTCCTGCCGATCGGTTTCGAACCGATCCGGCAGCCCAGGCTGC TTTTGAATCAGACGGGTTGCTCGCGTACACCGCTCGACCTCGCGGGGTGGTCTTTCCCGAGACCGCCGACGAGGTCGTGT CTGCGGTACGGTGGTGTTACGAACATCACGTGCCGGTGGTCGCTCGAGGCAGCGGCACGGGGTTGTCCGGTGGCGCGATG CCACATCGCGATGGGATTGTGATCGCGCTGAATCGGCTGAACCGAATCTTGCACGTTGATCCCGTTGAGCGAACCGCGAC GGTCCAGTGCGGGGTGGTGAACCTCGCCGTTTCTAAGGCTGCTCGCCCACACGGGTTGTACTTCGCACCGGATCCGTCCA GCCAATCGGTGTGCACGATTGGTGGCAACATCGCGTTCAATTCCGGTGGGGCTCACTGCTTGAAATACGGCATGACCGCC GGGCACACGTTGGCGATGGATGTGGTTCTGGGCGATGGGACCGTGACCAGCATCGGTGGATCTTCGTTGGAGCATGCCGG GCCGGATTCCACCGGTTTCATTTGTGGCAACGAAGGCATGTTGGGGATCGCGTTGCAGGCCACATTGCGATTGCTGCCTT TGCCAGAAGTCTTTCATACCGTCTTGGTGGGTTACGACGACATTCGCGCGGCCGGGAATGCGGTTGGTGCGATCATCGCC GCGAATTTGTTGCCGGGAGCGATGGAGATCATGGACGCGATGTCGATTCGCGCCGCCGAAGCCGCCGTGGCCTGTGGCTA TCCCAAGAATGCCAACAGCGTGTTGATTGTCGAACTGGAAGGTTCCGCCGAACGCGTTGCGATGGAAAAGGAAATCTTGG CCGAAGTGATCGCCAGCACCCATCCCTCGGCGGTCGAGATTGCTGCCAACGATGCCGAACGATTGGCGATTTGGAAAGGC CGCAAATCCGTGTTCTCAGCGGCGGGACGGCTCAGCCCAGACTTCATCGTGCAGGACGGTGTCGTTCCCCGGCGTTGCTT GGGCGAAGCTCTCGAACGGATCGAAGCGATGAGTCGCGAGTGTGGCGTGCCGGTCGCGAACGTCTTTCATGCTGGCGACG GCAACTTGCACCCATTGATCATGTACGACGGAAAGATCCCAGGGGCCTTTGACAAGGCCAACGACTTCGCTCATTCGATC CTTCGGTTGTGCATCGAGATGGGCGGTTCCATCACCGGCGAACACGGGGTGGGGATTGAGAAACGTGGCGTTTTTGCTGA GATGTTTGACGAACCCACGATCAATTTGATGCACCGCGTGCGAGCGGAAATGGACCCGCATGAAATTTGCAATCGCGGCA AGATGTTTCCCGATGCGGAGTCCCCTGCCCTGGCCACGTCTGGATTGCATCCGTTGGAAAAAGCGGGAGTGATCTTCCGT GAGTGA Protein sequence : MNPSDLTGLAELFPADRFRTDPAAQAAFESDGLLAYTARPRGVVFPETADEVVSAVRWCYEHHVPVVARGSGTGLSGGAM PHRDGIVIALNRLNRILHVDPVERTATVQCGVVNLAVSKAARPHGLYFAPDPSSQSVCTIGGNIAFNSGGAHCLKYGMTA GHTLAMDVVLGDGTVTSIGGSSLEHAGPDSTGFICGNEGMLGIALQATLRLLPLPEVFHTVLVGYDDIRAAGNAVGAIIA ANLLPGAMEIMDAMSIRAAEAAVACGYPKNANSVLIVELEGSAERVAMEKEILAEVIASTHPSAVEIAANDAERLAIWKG RKSVFSAAGRLSPDFIVQDGVVPRRCLGEALERIEAMSRECGVPVANVFHAGDGNLHPLIMYDGKIPGAFDKANDFAHSI LRLCIEMGGSITGEHGVGIEKRGVFAEMFDEPTINLMHRVRAEMDPHEICNRGKMFPDAESPALATSGLHPLEKAGVIFR E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 3e-88 | 46 |
