Gene Information

Name : ccmk1 (SYNW1719)
Accession : NP_897810.1
Strain : Synechococcus sp. WH 8102
Genome accession: NC_005070
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism protein CcmK
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1653216 - 1653527 bp
Length : 312 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTAACGAAACCATGGGCATCGCCCTCGGCATGATCGAGACCCGCGGTCTGGTCCCCGCCATCGAGGCAGCTGATGC
CATGACCAAGGCTGCCGAAGTGCGCCTGATCGGTCGTGAGTTCGTCGGCGGCGGCTACGTCACCGTTTTGGTGCGCGGCG
AAACCGGCGCTGTGAACGCTGCTGTGCGCGCTGGCGCTGATGCCTGCGAGCGCGTCGGCGACGGCCTCGTGGCTGCTCAC
ATCATTGCCCGCCCCCACCGCGAAGTGGAGCCTGCACTGGGCAACGGCAACTTCCTCGGTCAGAAGGACTGA

Protein sequence : 
MANETMGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAH
IIARPHREVEPALGNGNFLGQKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-12 54
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ccmk1 NP_897810.1 carbon dioxide concentrating mechanism protein CcmK VFG1596 Protein 7e-12 60
ccmk1 NP_897810.1 carbon dioxide concentrating mechanism protein CcmK VFG1597 Protein 2e-12 54
ccmk1 NP_897810.1 carbon dioxide concentrating mechanism protein CcmK VFG1598 Protein 9e-12 52