Gene Information

Name : csoS1 (PMM0549)
Accession : NP_892667.1
Strain : Prochlorococcus marinus CCMP1986
Genome accession: NC_005072
Putative virulence/resistance : Virulence
Product : carboxysome shell protein CsoS1
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 518725 - 519021 bp
Length : 297 bp
Strand : +
Note : -

DNA sequence : 
ATGGGTATCGCACTCGGCATGATCGAGACACGCGGACTTGTACCTGCAATCGAAGCAGCAGACGCAATGACCAAGGCAGC
AGAAGTTCGTCTTATTGGTCGTGAATTCGTAGGTGGCGGTTATGTCACAGTTTTGGTTAGAGGAGAAACAGGAGCTGTCA
ACGCAGCAGTAAGAGCTGGAGCTGATGCTTGTGAGAGAGTTGGTGATGGTCTCGTCGCAGCTCACATCATTGCTCGCCCT
CATAGAGAAGTTGAGCCAGCACTTGGTAATGGCGATTTCCTTGGTCAAAAGGACTAA

Protein sequence : 
MGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHIIARP
HREVEPALGNGDFLGQKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 3e-11 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 5e-12 54
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 3e-11 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1 NP_892667.1 carboxysome shell protein CsoS1 VFG1596 Protein 1e-11 60
csoS1 NP_892667.1 carboxysome shell protein CsoS1 VFG1597 Protein 2e-12 54
csoS1 NP_892667.1 carboxysome shell protein CsoS1 VFG1598 Protein 1e-11 52