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Name : secD (CV_1345) Accession : NP_901015.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1416455 - 1418302 bp Length : 1848 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTACCCTCTCTGGAAATACCTCGTCATCGTGGTGGCGCTGATCATCTCGGCGATTTACACGCTGCCCAATTT CTACGGCGAGACCCCCGCGGTGCAGGTCTCCAGCTCGCGCCAATCCATTCCGGTGGACTCCGCCGTGATGGCGCGCGTGG AAGACGCGCTCAAATCGCAGAACCTCAGCCCCGACGGCGTCTTCCTCGACGCCAACAGCCTGAAGGTCCGCTTCAAGGAT ACCGACACCCAGCTGAAGGCGCGCGACGCCATCCAGCACGCGCTGGGCGACAACTACATCATCGCGCTGAACCTGCTGCC GGCCTCGCCGTCCTGGCTGGCCTCGCTGCACGCCAACCCGATGTTCCTCGGCCTGGACCTGCGCGGCGGCGTGCACTTCC TGCTGGAAGTGGACATGAAGGCGGCCACCGACAAGGCGATGGAACGCTACGCCGGCGACCTGCGCCGCGAGCTGAAGAAC AAGCAGGTGCGCTACGGCAGCATCAAGCGCAACGGCAACACGCTGGAAGTGCAGCTGCGCGACGAGGACACGCTGAAGTC GGCCCAGGACGTGGTTTACCGCATGCTGCCCAGCCTGGCGGTCCGCAGCGACGACGCCAGCAACAAGCTGCTGCTGACGC TGAAGCCTGAAGAAATCACCAAGATTCAGAACGACGCGGTCAAGCAGAACATCACCACCCTGCACAACCGCGTCAACGAG CTGGGCACCACCGAGCCCATCATCCAGCAGAACGGCCCCAACCGCATCGTGGTGCAGCTGCCCGGCATCCAGGACACCGC CCGCGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGTGCACATGGTCGAGGACGACCAGGGCAAGGTGGCCGAGG CGCTGGCCGGCAACGTGCCGGCAGGCTACGAGCTGCTGGACGAAGCCACCTCCCGCGGCCAGAGCAAGATTCTGCTCAAG AGCGACGTGGAGCTGACCGGCGACAATATCAACGACGCCCAGCCCAGCTTCGACCAGTTCGGCGCGCCCGCCGTCAGCAT CAATCTGGACAGCACCGGCGCCGCCATTTTCCGCCAGCTGACCGCCGAGAACGTCGGCAAGCGCATGGCGATGGTGCTGG TGGAAAAAGGCCGCAAGGAAGTGGTCACCGCGCCGGTGATCCGCACCGAAATCGGCGGCGGCCGCGTGGAAATCTCCGGC AGCATGAACAGCGCCGAGGCCAACGACACCGCCCTCTTGCTGCGCGCAGGCTCCCTGGCCGCCCCGATGAACATCATCGA AGAGCGCACCATCGGCCCCAGCCTGGGCAAGGAAAACATCGAGAAGGGCTTCCACGCCACGTTGTGGGGCTTCGCCGCCA TCGCCGTGTTCATGGTGATCTACTACGGCCTGTTCGGCGTATTCTCCTCGCTGTCGCTGGCGATCAACGTGTTCCTGCTG ATCGCGCTGCTGTCCATGCTGCAGGCCACGCTGACCCTGCCCGGCATCGCCGCCATCGCGCTGGCGCTGGGCATGGCCAT CGACGCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAGCTGCGCAACGGCATGCCGCCTCACTCGGCCATCCACGCCG GCTACGACCACGCCTGGCACACCATCCTGGACTCCAACGTCACCACGCTGATCGCCGGCCTGGCGCTGATGATCTTCGGC TCCGGCCCGGTGCGCGGCTTCGCCATCGTCCACTGCCTGGGCATCCTGACCTCGATGTTCTCGGCGGTGCTGGTGTCGCG CGGCTTGGTGCACCTGTGGTACGGCCGTCGCCGCAAACTGACCTCGCTGGCCATCGGCCAGGTGTGGAAACCGGAAAACA AGGGCTAA Protein sequence : MNRYPLWKYLVIVVALIISAIYTLPNFYGETPAVQVSSSRQSIPVDSAVMARVEDALKSQNLSPDGVFLDANSLKVRFKD TDTQLKARDAIQHALGDNYIIALNLLPASPSWLASLHANPMFLGLDLRGGVHFLLEVDMKAATDKAMERYAGDLRRELKN KQVRYGSIKRNGNTLEVQLRDEDTLKSAQDVVYRMLPSLAVRSDDASNKLLLTLKPEEITKIQNDAVKQNITTLHNRVNE LGTTEPIIQQNGPNRIVVQLPGIQDTARAKDIIGRTATLEVHMVEDDQGKVAEALAGNVPAGYELLDEATSRGQSKILLK SDVELTGDNINDAQPSFDQFGAPAVSINLDSTGAAIFRQLTAENVGKRMAMVLVEKGRKEVVTAPVIRTEIGGGRVEISG SMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKENIEKGFHATLWGFAAIAVFMVIYYGLFGVFSSLSLAINVFLL IALLSMLQATLTLPGIAAIALALGMAIDANVLINERIREELRNGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIFG SGPVRGFAIVHCLGILTSMFSAVLVSRGLVHLWYGRRRKLTSLAIGQVWKPENKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-87 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-86 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-86 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-86 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-86 | 41 |
