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Name : clpB (CV_1944) Accession : NP_901614.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 2115360 - 2117939 bp Length : 2580 bp Strand : + Note : identified by sequence similarity; ORF located using Blastx/COG0542 DNA sequence : ATGCGATTCGACAAGCTGACCACCAAGTTCCAGCAGGCGCTGGGGGATGCCCAGAGCCTCGCCGTGGCGAACGACAACCC ATACATCGAGCCGCAGCACCTGCTGCTGGCCATGCTGGACGACGCCGAAGCCGGCGTCGGCGGCCTGCTGGCGCGCGCCG GCGTCAACGTGCCGGCGCTGAAGGCCGGTCTCAAGCAGGCGATCGACCGCCTGCCGCGGGTGCAGGGCCATGGCGGCGAG ATCACCGTGTCGCGCGATCTGGCCAATCTGCTCAACATCGCCGACAAGATCGCGATGAAGCTGGGCGACGAATTCATCGC CAGCGAGCTGTATCTGTCCGCGCTGTCACAGGACAAGGGCGAGGCCGGCCGCTTGCTGAAAGAGCACGGCGGCAATCACG CGTCCATCCAGGCGGCGATAGACGCGGTGCGCGGCGGCGAGAGCGTCAACAGCGCCGACGCCGAAGGCCAGCGCGAGGCG CTGAAGAAATACACCATGGATCTGACCGAGCGCGCCCGCCAGGGCAAGCTGGACCCGGTGATCGGCCGCGACGACGAAAT CCGCCGCGCGATCCAGGTATTGCAGCGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGCCGGGCGTGGGCAAGACCG CCATCGTCGAAGGTCTGGCGCAGCGGATCGTCAACGGCGAAGTGCCGGAAAGCCTGAAGAACAAGCGCCTGCTGGTGCTG GACCTGGCGGCGCTGATCGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCGGTGCTGAACGACCTCTC CAAGGACGACGGCCAGACGCTGATCTTCATCGACGAAATCCACACCCTGGTGGGCGCGGGCAAGGCCGACGGCGCGATGG ACGCCGGCAACATGCTGAAGCCGGCGCTGGCGCGCGGCGAGCTGCACTGCATCGGTGCCACCACGCTGGACGAGTACCGC AAGTACATCGAGAAGGACGCCGCGCTGGAGCGCCGCTTCCAGAAGGTGCTGGTGGGCGAGCCGTCGGTGGAGGACACCAT CGCCATCCTGCGCGGCCTGCAGGAAAAGTACGAAATCCACCACGGCGTGGACATCACCGACCCGGCCATCGTCGCCGCGG CGGAACTGTCCCAGCGCTACATCACCGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGACGAGGCCGCCAGCCGC ATCAAGATGGAGCTGGACTCCAAGCCGGAGGCGATGGACAAGCTTGACCGCAGGCTGATCCAACTGAAGATCGAGCGCGA AGCGGTGAACAAGGAAAGCGACGAAGCCAGCCAGAAACGGCTGAAGCTGATCGAGGACGAGATCGCCGAGCTGTCGCGCG AATACGCCGACCTGGAAGAGATCTGGAAGGCCGAGAAGGCCGCCCAGCAGGGCTCGCAGAGCATCAAGGAGGAGATCGAC CGCCTGAAGGTGGACATGGAGGAGCTCAAGCGCAAGGGCGACTGGCAGAAATTGGCAGAACTGCAGTACGGCAAGCTGCC GCAGCTCGAGGCGCGGCTGAAGGAGGCCGAGTCCGCCGGCGACAAGGGCGAGGCCAAGCCCAACCGCCTGCTGCGCACCC AGGTGGGCGCCGAGGAGATCGCCGAGGTGGTCAGCCGGGCCACCGGCATCCCGGTGTCCAAGATGTTGACCGGCGAGCGC GAAAAGCTGCTGAAGATGGAGGATGTGCTGCACCAGCGCGTGGTCGGGCAGGACGAGGCGGTCAGCGCGGTGGCCGACGC CATCCGCCGCTCGCGCTCCGGCCTGGCCGATCCCAACAAGCCGTACGGCTCCTTCCTGTTCCTGGGACCGACCGGCGTCG GCAAGACCGAGCTGTGCAAGACGCTGGCCAGCTTCCTGTTCGACAGCAAAGACCACCTGATCCGCATCGACATGTCCGAG TACATGGAGAAGCATTCGGTGGCGCGGCTGATCGGCGCGCCGCCCGGTTACGTCGGCTACGAGGAAGGCGGCTATCTCAC CGAGCAGGTGCGCCGCAAGCCGTACAGCGTGATCCTGCTGGACGAGGTGGAAAAGGCGCATCCGGACGTGTTCAACGTGC TGCTGCAGGTGCTGGACGACGGCCGGCTCACAGATGGCCAGGGCCGCACCGTGGACTTCAAGAACACGGTGATCGTGATG ACGTCGAACATCGGCAGCCAGCAGATCCAGGCGATGGCCACCGACGATTACCAGGTGATCAAGCTCGCCGTGATGGCGGA AGTGAAGACGCAGTTCCGGCCGGAATTCATCAACCGCATCGACGAGGTGGTGGTGTTCCACGGCCTGGACGAGAAACACA TCCAGTCCATCGCCCGCATCCAGTTGAAGAGCCTGGAAAACCGCTTGGCCAAGCTGGAGCTGAGCCTGCAGATCAGCGAC GAGGCGCTGGCGCTGTTGTCCGAAGCCGGTTTCGACCCGGTCTACGGCGCGCGGCCGCTGAAGCGGGCGATCCAGGCCGA GCTGGAAAACCCGCTGGCCAAGGCCATCCTGGCCGGCAAGTACCCGCCGAAAGCCACGGTGATGGTGGAAGCCCGGAACG GACAACTGGCTTTCGCCTGA Protein sequence : MRFDKLTTKFQQALGDAQSLAVANDNPYIEPQHLLLAMLDDAEAGVGGLLARAGVNVPALKAGLKQAIDRLPRVQGHGGE ITVSRDLANLLNIADKIAMKLGDEFIASELYLSALSQDKGEAGRLLKEHGGNHASIQAAIDAVRGGESVNSADAEGQREA LKKYTMDLTERARQGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLKNKRLLVL DLAALIAGAKYRGEFEERLKAVLNDLSKDDGQTLIFIDEIHTLVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYR KYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQEKYEIHHGVDITDPAIVAAAELSQRYITDRFLPDKAIDLIDEAASR IKMELDSKPEAMDKLDRRLIQLKIEREAVNKESDEASQKRLKLIEDEIAELSREYADLEEIWKAEKAAQQGSQSIKEEID RLKVDMEELKRKGDWQKLAELQYGKLPQLEARLKEAESAGDKGEAKPNRLLRTQVGAEEIAEVVSRATGIPVSKMLTGER EKLLKMEDVLHQRVVGQDEAVSAVADAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKTLASFLFDSKDHLIRIDMSE YMEKHSVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVM TSNIGSQQIQAMATDDYQVIKLAVMAEVKTQFRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISD EALALLSEAGFDPVYGARPLKRAIQAELENPLAKAILAGKYPPKATVMVEARNGQLAFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-102 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_901614.1 | ATP-dependent Clp protease subunit | VFG0079 | Protein | 7e-153 | 45 |
| clpB | NP_901614.1 | ATP-dependent Clp protease subunit | VFG2084 | Protein | 8e-101 | 41 |
| clpB | NP_901614.1 | ATP-dependent Clp protease subunit | VFG2076 | Protein | 2e-107 | 41 |
