Gene Information

Name : hlyB (CV_0513)
Accession : NP_900183.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : hemolysin B
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2274
EC number : -
Position : 539276 - 541405 bp
Length : 2130 bp
Strand : +
Note : identified by sequence similarity; ORF located using Blastx/COG2274/TC:3.A.1.109.1

DNA sequence : 
ATGTCCGATCACTTCAGCGGTGACGTGGTGCCAGACCACGGCCTGCTCGGCCTGGTGCTGTTGGCCCAGTTCCACGGCAT
CGCCGCCGACCCCGAGCAGCTCTCCCACCAGTTCGGCCGCGCCGCCGAACCCTTCTCCGAAACTGATCTCCTCCTCGCCG
CCAAGCATCTGGAGCTGAAAGTCAAGATCGTCCAGCAGCCGCTGGACCGCATCGGCCTGATGGCCTTGCCGGCGCTGGCG
CTGGCGGCCAACGGCGAGCACTTCATCGTCGCCCGCTGCGACGGCGACAAGGTGTTGATCCATGACTTGAAGCAGGGCCG
TCCCGCGGTGCTGAGCCTGGCCGAGCTGGCGGCGCGTTACGACGGCCGGCTGCTGGTGGTCGCCTCGCGCGCGTCGGCGG
CCGGGGCCTTGGTCAAGTTCGACTTCACCTGGTTCGTGCCGGCCATCGTCAAGTACCGCAAGCTGCTGCTGGAGGTGCTG
GGCGTGTCCTTCGTGCTGCAGCTGTTCGCGCTGGTGACGCCGCTGTTCTTCCAGGTGGTGATGGACAAGGTGCTGGTCAA
CCGCGCCTTCAACACACTGGACGTGATCGCCGTCGGGCTGTTGGCGCTGTCGGTGTTCAACGTGATCCTGTCCGCCTTGC
GCGGCCACGTGTTCGCCCACACCACCAGCCGCATCGACGTGGAGCTGGGCGCGCGCTTGTTCCGCCACCTGCTGGCGCTG
CCGCTGGCCTATTACGAGGCGCGCCGCGTCGGCGACACCGTGGCGCGGGTGCGCGAGCTGGACAGCATCCGCAACTTCCT
CACCGGCCAGGCGCTGACCACGGTGCTGGACCTGCTGTTCTCCTTCGTTTTCCTGGCGGTGATGTTCTATTACAGCGGCT
GGCTGACGCTGATCGTGGTGATTTCCTTGCCATGCTACGCCGCCTGGTCGGCCATGCTGACGCCGGTGCTGCGCCGGCGG
CTGGATGAGAAATTCGCCCGCGGCGCCGACAACCAGTCCTTCCTGGTGGAGTCGGTTGGCGGCATCGGCACCATCAAGTC
GATGGCGGTGGAGCCGCACATGACCCGGCGCTGGGACAACCAGCTGGCTGCCTACGTGGCCGCCGGCTTCCGCGTGACGC
GGCTGGCCAATATCGGCCAGAACGGCGTGCAGCTGATCCAGAAGCTGGTGACGGTGGCCACCTTGTGGCTGGGCGCCAAG
CTGGTGATCGGCGGCGATCTGTCGGTGGGCCAGCTGATCGCCTTCAATATGCTGGCCGGCCAGGTGGCGGCGCCGGTGGT
GCGCCTGGCCCAGCTGTGGCAGGACTTCCAGCAGGTGGGCATCTCGGTGGAGCGGCTGGGGGACATTCTCAACACCCGCA
CCGAGCTGCCGGCCAGCCGCGCGGCGCTGCCGGCCATCCAGGGCAAGATCGAATTCGACCAGGTGGTGTTCCGCTACCGC
CCGGACGGCCCGGAGATCCTGCGCAAGCTGAGCCTGGATATCCGCGCCGGCGAGGTGGTGGGCATCGTCGGCCGCTCCGG
CTCAGGCAAGAGCACGCTGACCAAGCTGGTGCAGCGGCTGTACGTGCCGGAGTCCGGCCGCGTGCTGGTGGACGGCAACG
ACCTGGCCCTGGCCGATCCGGCCTGGCTGCGCCGCCAGATCGGCGTGGTGTTGCAGGAGAACCTGCTGTTCAACCGCAGC
GTGCGCGACAACATCGCGCTGTCCGATCCCGGCATGTCGCTGGACGCGGTGATCCGCGCCGCCAAGCTGGCCGGCGCCCA
CGATTTCATCATGGAGCTGGCCGAGGGCTACGACACCATGGTAGGCGAACACGGCGCCAGCCTGTCCGGCGGCCAGCGCC
AGCGCATCGCCATCGCCCGCGCGCTGGTCTGCAACCCGCGCATCCTGATCCTGGACGAGGCCACCAGCGCGCTGGACTAC
GAGTCCGAGCGCGCGGTGATGCAGAACATGCGCGCCATCTGCCAGGGCCGCACCGTGCTGATCATCGCCCACCGCCTGTC
CACCGTGCGCGGCGCCCATCGCATCATCGCCATGGACAAGGGCGTGATCGTCGAGGCCGGCAGCCACGCCGAGCTGGCGC
AGAAACCGGGCGGCTACTATGCCCACCTCCACAGCTTGCAGCAAGGATAA

Protein sequence : 
MSDHFSGDVVPDHGLLGLVLLAQFHGIAADPEQLSHQFGRAAEPFSETDLLLAAKHLELKVKIVQQPLDRIGLMALPALA
LAANGEHFIVARCDGDKVLIHDLKQGRPAVLSLAELAARYDGRLLVVASRASAAGALVKFDFTWFVPAIVKYRKLLLEVL
GVSFVLQLFALVTPLFFQVVMDKVLVNRAFNTLDVIAVGLLALSVFNVILSALRGHVFAHTTSRIDVELGARLFRHLLAL
PLAYYEARRVGDTVARVRELDSIRNFLTGQALTTVLDLLFSFVFLAVMFYYSGWLTLIVVISLPCYAAWSAMLTPVLRRR
LDEKFARGADNQSFLVESVGGIGTIKSMAVEPHMTRRWDNQLAAYVAAGFRVTRLANIGQNGVQLIQKLVTVATLWLGAK
LVIGGDLSVGQLIAFNMLAGQVAAPVVRLAQLWQDFQQVGISVERLGDILNTRTELPASRAALPAIQGKIEFDQVVFRYR
PDGPEILRKLSLDIRAGEVVGIVGRSGSGKSTLTKLVQRLYVPESGRVLVDGNDLALADPAWLRRQIGVVLQENLLFNRS
VRDNIALSDPGMSLDAVIRAAKLAGAHDFIMELAEGYDTMVGEHGASLSGGQRQRIAIARALVCNPRILILDEATSALDY
ESERAVMQNMRAICQGRTVLIIAHRLSTVRGAHRIIAMDKGVIVEAGSHAELAQKPGGYYAHLHSLQQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 66
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 66
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hlyB NP_900183.1 hemolysin B VFG1501 Protein 0.0 66
hlyB NP_900183.1 hemolysin B VFG0907 Protein 0.0 66
hlyB NP_900183.1 hemolysin B VFG1557 Protein 0.0 66
hlyB NP_900183.1 hemolysin B VFG0841 Protein 0.0 61
hlyB NP_900183.1 hemolysin B VFG1269 Protein 0.0 60