|
Name : secD (VV0748) Accession : NP_933541.1 Strain : Genome accession: NC_005139 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 754540 - 756396 bp Length : 1857 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGCTGAACCGTTATCCTTTATGGAAGTACTTGATGGTTATGTTTGCCATTGCCATCGCTGCCTTGTACGCACTTCCAAA TATCTACGGTGAAGATCCGGCTATTCAAGTTACAGGGGCGCGTGGCGCCTCTGTAGATATGTCAACGCTGGATGCTGTCA CTAACGCTCTTAATAAAGAGAATCTTTCCCATAAATCCATTGCTTTAGAGAATGGATCCATTCTTGTTCGTTTTAACGAC ACCGATACGCAAATTAGTGCTCGTGATGTGATCAGTGAAGCGTTGGGCAAAGACAAAATTGTTGCTCTGAACTTAGCACC TTCAACGCCAGACTGGCTTGAATCGATAGGTGCTGCTCCTATGAAACTGGGTCTTGACCTACGTGGTGGTGTGCACTTCT TGATGGAAGTGGATATGGATGCCGCGATGGAAAAGCTGGTGGGGCAACAAGAAGATGCTTTCCGTAGTGAACTTCGTGAT GCAAAAATTCGCTATCGCTCTATTCGCCCTGTTGGCAGTGATGCGATCGAAGTGTTGCTCAGAGATGGTGAAGAGCTATC TCAAGCAAAACGTGAACTTGAAAAATTGCATCCTGATATGGCTTTTGTCGAATCAGACAAAGATGGCCGTTACGCCTTAA TTGCTACCTTTACTGAAACCCGTCTGCAAGAAATCCGTAACTACGCTGTTGAACAGAACATCACCATACTACGTAACCGT GTGAATGAGCTAGGTGTTGCTGAGCCACTTGTTCAACGTCAAGGTGCTAGCCGTATCGTGGTTGAACTGCCAGGTGTGCA AGATACTGCTCGTGCCAAAGAGATTCTAGGTGCGACAGCAACGCTAGAATTCCGTGAAGTGGATGACAAAGCGGATCTTG CTGCTGCGGCAAGTGGTCGAGCGCCTGCGGGCAGCGAGATTAAGCAAGATCGTAATGGCCGTCCTGTGGTGTTGAAGAAA CGCGTTATTCTCAGTGGGGCAAGCATTACCGATGCAAGTTCAAGTGTTGATGAATATGGTCGTCCTCAAGTAAACATCTC GCTAGACAGCGAAGGTGGTAACAAGATGGCTGCGTTTTCGAAGAAAAACATTGGCAAGCTAATGGCCACGGTGTTTGCGG AATACAAAGACAGCGGTCGTAAGTCTCCAGAAGGCAAAGTCATTTTGACCAAGCATGAGGAAGTCATTAACCAAGCCACG ATCCAGTCGGCTCTTGGTCGTAACTTCCGTATTACGGGTATCGATTCTGCTGCTGAAGCACATAACCTTGCGTTGCTACT GCGTGCTGGTGCTTTGATCGCACCTATCTCAATCGTTGAAGAGCGTACCATTGGTCCATCAATGGGTCAGCAAAACATCG ATATGGGTATCCAAGCGTGTATTTGGGGCATGGTTGCGGTGATGTTGTTCACACTGCTTTACTACCGCAAGTTTGGTCTG ATTGCGAACGTCGCCTTGATGGCAAACCTTGTCCTGATCATCGGCGTGATGTCCATGATTCCAGGTGCGACCATGACGTT ACCAGGTATTGCCGGTATTGTTCTAACGGTCGGTATGGCGGTCGATGCAAACGTACTGATCTTTGAGCGTATTCGTGAAG AGCTGCGTGAAGGTCGCAATCCTCAGCAAGCGATTCACCAAGGTTATGCCAATGCATTTAGCACCATTGCGGATGCGAAC ATCACAACCTTGATTACCGCGATTATTCTATTTGCCGTCGGTACGGGTGCAATCAAAGGCTTTGCTGTGACGCTATCTAT CGGTATTTTGACCTCAATGTTTACGGCCATTATTGGTACACGTTGTATCGTGAACCTGCTTTATGGTGGTAAACGCATTA ATAAACTGTCGATCTAA Protein sequence : MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKENLSHKSIALENGSILVRFND TDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRD AKIRYRSIRPVGSDAIEVLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKK RVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQAT IQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADAN ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-116 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-116 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-116 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-116 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-116 | 49 |
