|
Name : rpoB (Bd2984) Accession : NP_969761.1 Strain : Bdellovibrio bacteriovorus HD100 Genome accession: NC_005363 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2881208 - 2885476 bp Length : 4269 bp Strand : - Note : InterPro: RNA polymerases beta subunit DNA sequence : GTGGGCCTTGGAACATTCCCCCCGAAGCGAATGTCCGATTTTCTTATCACGGAGAGTACATTGGAAAAAACTCCAGTTAC GGCTTCTAACATTCGAGTTAGAAAGTCATTCGCGAAAAATAAGCAAGTCATTGATATTCCAAATCTGATTGAACTGCAGA AGTCTTCTTACGAAGCTTTCATTCAAAAAGATATGGATCCAGATCGTCGCGGCGATGCTGGTCTTAATGGCGTTTTCAAA TCTGTTTTCCCAATCACAGATTTCAACAATACAGCAAGCCTTGAGTTTGTATCTTACACTCTAGAGCCAGCTAAGTACGA CGTGGACGAGTGCCGTCAGCGTGGTATGACTTTCGCTGCTCCTATCAAGGTGACTCTTCGTCTGATCGTTTTCGATGTTG ATGAAGAAACTGAAGCACGCAGCATCCGTGACGTGAAAGAGCAGGAAGTTTATCTGGGCGAAATCCCATTGATGACTGCC AACGGTTCTTTCATCATCAACGGTACTGAGCGCGTTGTTGTTTCCCAGTTGCACAGATCTCCAGGCGTGTTCTTCGATCA CGATGGTGGTAAAAACAATGCTTCTGGTAAATTGATCTACTCTGCACGTGTGATCCCTTATCGTGGTTCATGGTTGGATG CTGAGTTTGACCAAAAAGATCTTATCCACGTACGTATCGACCGTCGTCGTAAGTTCCCAGTTACAATCCTTCTTAAAGCT CTTGGTTACAACTCTGAGCAGCTTCTGGAATACTTCTACGATCTTGATGAAGTTTACGTTAAGGGCGGCAAGCTCTTCCG TAAGTTGGACATCGAGCGTATGTCCGGTCAAAGAGCATTGACTGATATCGTTGATCCAAAAACTGGCGAAGCGCTGGTTA AAGCGGGTCGTCGTATCACTCGTGCGATCGTTAAGAAAATCAAAGATCTTGATATCACAGAGCTTGATGTTCTTCCGGAA GATCTGGAAGGCAAAGTTCTGGCGAAGCCATTGATCGATGAATCCACTGGTGAGATCATCGCTGATGCGAATGCTGAGCT GAACGCTGCAATCATCAAGCGTTCCATCGAAGCTGGTATCGAGAGCTTCTTCATGATCTTCTTCGACGGTTTGACTGTGG GTCCTTACCTGCGCAACACCCTGTTGGTTGATAAAGTCTCCAACAAAGAAGAATCTTTGGTTGAGATCTACAAGCGTCTT CGTCCTGGTGAGCCTCCGACTTTGGAAGCGGCTACGACATTCTTCGGCCGTTTGTTCTTCGATCCAGAGACTTATGACCT TTCTGAAGTTGGTCGTATCAAGATCAATCACAGATTCGGTATCTCCATGGACGAGTGCCCACCGTCTCACAGAACACTGA CTCACAAGGATATCCTGAGCACCATCAAAACTTTGATCGATCTGAAAAATGGTCGTGGTGTTATCGACGATATCGATCAC TTGGGTAACCGTCGTGTTCGTTCCGTAGGTGAGTTGCTTGAAAACCAATACCGTATCGGTTTGGTTCGTATGGAGCGCGC TATCCGTGAACGTATGTCCCTTCAGGACGTTGAAACAATGATGCCTCACGATCTTGTGAACGCGAAACCTGTGAACGCCG TAGTTAAAGAATTCTTCGGTTCTTCCCAGTTGTCTCAGTTCATGGATCAGACGAACCCGCTTTCCGAGATCACGCACAAA CGTCGTTTGTCTGCTCTTGGACCTGGTGGTTTGACTCGTGATCGCGCTGGTTTCGAAGTACGTGACGTACATCCTACGCA CTACGGACGTATCTGTCCTATCGAAACTCCAGAGGGTCCAAACATCGGTTTGATCGCTTCCTTGGCTACTTATGCTCGTA TCAACAACTATGGTTTCATTGAGACTCCATACCGTAAAGTTGAAGCGGGTCAGGTTTCCAAAGACATCAACTATCTTTCT GCATTGGAAGAAGCTGGTCACCACATCGCTCCGGCGGCTCGTGACGAAGCTGGAAACAAAGCTATCCAGACTGCGACTAC CATCACTCGTCGTGACGGTGAGTATGAGATCGTAGACAAGGATAAAGTTGCTTTGATGGACGTTTCTCCATCTCAGTTGG TTTCCATCGCAGCTTCCCTGATTCCATTCCTTGAGCACGATGACGCCAACCGTGCCTTGATGGGATCGAACATGCAACGT CAAGCGGTTCCACTGCTTCGTTCTCGCGCACCACTTGTTGGTACAGGCGTAGAGCGTTTGGTTGCTCGTGACTCCGGTAC TTCCATCGTTGCTCAAAACGATGGTATCGTTGAGGAAGTTGATGCTTCCCGTATCGTTATCCGTCGTTTCGCCAAAGGCG GCGAGCTGGGTGCGAACGTGGACATCTACAACCTGACGAAGTATCAGCGTACGAATCAAAATACGTGCTTCAACCAAAAA CCAATCGTTACTGTTGGTGACAAGATTTCCAAAGGCGACATCATCGCTGACGGTCCTTCCACTGAGCTTGGTGAATTGGC ATTGGGTCAGAACATCCTTGTGGCGTTCACCCCATGGCAAGGTTACAACTTCGAGGACTCCATCCTTATTTCTGAGCGTT TGTTGAAAGACGACGTTTACACTTCCATCCACATCGAAGAATTCGAGTGCGTGGCTCGTGATACAAAACTTGGTAAGGAA GAGATCACTCGCGATATCGCCAACGTAGGTGAGGAAGCTCTTAAAGACCTGGACAGCTCTGGTATCATCCGCATCGGTGC GGAAGTTCGCCCTGGCTTCATCCTGGTTGGTAAAGTGACTCCAAAAGGTGAAACTCAGCTTTCTCCTGAGGAAAAACTTT TGAGAGCGATCTTCGGTGAAAAAGCCGGCGACGTTCGTGATACATCTTTGCGCGCTCCATCCGGCGTGTACGGAACTGTT ATCGATGCTCAAGTTTACTCTCGTGAAGGCGCAGACCGCGATGAGCGTTTGTCGTTGATCATCGAAGAGAAAAAACGCAA GCTTGAAAAAGACTTGGCGGTTGAGCAGAACGTTATCAAAAATAACGCTATCTCCAAACTTCGTGACATCCTGGTGGGTA AAATCACTACAGGCGTTCTTCTGAATGAAGACGGTTCTCAGAAGTTGTTGAACAAAGGTCAGGAAATCACAGAGGCGGAT CTAGAGACAGTTCCATTCGAATTGTTGAACTACATCCCTCTTGAGCAAGACCTTGAGTTCCAGGTGAACAAAATCATCGA CAATGCTCGTAACCAGTTGGATGCAGTTAAACTTGTGTTCAATGAAAAGATCGATCGTCTTCGTAAAGGTGACGAATTGC CTCCGGGCGTGATCAAAATGGTTAAAGTTTACGTTGCTATCAAACGTAAAATGCAAGTCGGTGACAAATTCGCCGGTCGT CACGGAAATAAGGGTGTTGTCTCCAAAGTATTGCCTGCGGAAGACATGCCTTACCTTGCTGACGGTACTCCAGTAGACAT GGTTCTGAACCCACTAGGGGTTCCTTCTCGTATGAATATCGGTCAGATCCTTGAGGTTCACTTGGGTTGGGCAGCGCACA ACCTTGGTAAACAACTGGGTGCTCATCTTGAGAAGTGGAATGCAGAGAACGCTCGCACAGAGATGAAAGACATCTTCAGC GACTCTGATATCTCCGCGAAACTTGATAAAGCAGACGATGCTTCATTGAAGTCCATGGTTCAGCGCATGAAGCACGGTAT CCACGTGGGTACGCCGGTGTTTGATGGTGCCCGTGAATCTGACGTGAAAGGTTTGCTTGCAAAAGCGCAAGTGCCTTCTT CCGGTAAGTCCGTTCTATTCGACGGTCGTACAGGGGAGCCGTTCACGAATCCGGTAACTGTCGGTATCATGTACATGCTG AAACTTCACCACTTGGTGGAAGAGAAGATCCACGCTCGTTCTATCGGACCTTACTCACTCGTTTCTCAACAGCCTCTGGG CGGTAAAGCTCAGTTCGGTGGTCAGCGTCTCGGGGAGATGGAGGTTTGGGCGATCGAAGCATACGGTGCTGCATACTCTC TGCAAGAGTTCCTGACTGTTAAGTCAGATGACGTTGCAGGTAGAACTCGTATGTACGAGAGCATCGTGAAGGGTGAAAAC ATCCTTGAGCCAGGCTTGCCTGAATCCTTCAACGTATTGGTGAAAGAGCTTCAATCTCTGGCACTGAACGTGGAGCTGAT GGAGTCTGACATTCTACGTGACCAAGATGAAGATTTTGGTGACGAAGAAGTGATCGAGGTAGAACCAGTTGCGCCGGTTG CGTCTAAAGACGAACCAGAGCAGCACTAA Protein sequence : MGLGTFPPKRMSDFLITESTLEKTPVTASNIRVRKSFAKNKQVIDIPNLIELQKSSYEAFIQKDMDPDRRGDAGLNGVFK SVFPITDFNNTASLEFVSYTLEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDVDEETEARSIRDVKEQEVYLGEIPLMTA NGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIYSARVIPYRGSWLDAEFDQKDLIHVRIDRRRKFPVTILLKA LGYNSEQLLEYFYDLDEVYVKGGKLFRKLDIERMSGQRALTDIVDPKTGEALVKAGRRITRAIVKKIKDLDITELDVLPE DLEGKVLAKPLIDESTGEIIADANAELNAAIIKRSIEAGIESFFMIFFDGLTVGPYLRNTLLVDKVSNKEESLVEIYKRL RPGEPPTLEAATTFFGRLFFDPETYDLSEVGRIKINHRFGISMDECPPSHRTLTHKDILSTIKTLIDLKNGRGVIDDIDH LGNRRVRSVGELLENQYRIGLVRMERAIRERMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHK RRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLATYARINNYGFIETPYRKVEAGQVSKDINYLS ALEEAGHHIAPAARDEAGNKAIQTATTITRRDGEYEIVDKDKVALMDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQR QAVPLLRSRAPLVGTGVERLVARDSGTSIVAQNDGIVEEVDASRIVIRRFAKGGELGANVDIYNLTKYQRTNQNTCFNQK PIVTVGDKISKGDIIADGPSTELGELALGQNILVAFTPWQGYNFEDSILISERLLKDDVYTSIHIEEFECVARDTKLGKE EITRDIANVGEEALKDLDSSGIIRIGAEVRPGFILVGKVTPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRAPSGVYGTV IDAQVYSREGADRDERLSLIIEEKKRKLEKDLAVEQNVIKNNAISKLRDILVGKITTGVLLNEDGSQKLLNKGQEITEAD LETVPFELLNYIPLEQDLEFQVNKIIDNARNQLDAVKLVFNEKIDRLRKGDELPPGVIKMVKVYVAIKRKMQVGDKFAGR HGNKGVVSKVLPAEDMPYLADGTPVDMVLNPLGVPSRMNIGQILEVHLGWAAHNLGKQLGAHLEKWNAENARTEMKDIFS DSDISAKLDKADDASLKSMVQRMKHGIHVGTPVFDGARESDVKGLLAKAQVPSSGKSVLFDGRTGEPFTNPVTVGIMYML KLHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVKSDDVAGRTRMYESIVKGEN ILEPGLPESFNVLVKELQSLALNVELMESDILRDQDEDFGDEEVIEVEPVAPVASKDEPEQH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 56 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 57 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 57 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| rpoB | NP_969761.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 55 |
