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Name : PSPPH_1093 (PSPPH_1093) Accession : YP_273362.2 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 1288105 - 1288608 bp Length : 504 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : ATGCCCATCGCCCACTCCGCTCTCAATCACACTGTCGAAAGCCTGTACAGGGCACACAACACCTGGCTGACGACCTGGTT GCGGCGCAGGCTCGGCTGCCCGCACAGCGCAGCGGATCTGGCCCAGGACACCTTCATCAAGGTATTGGGCGCACGCGATA CGCAGCAGATCGTCGAGCCTCGCGCTTTTCTGACGACGATTGCCAAACGTGTATTGTGCAATCACTACCGGCGTCAGGAC CTGGAGCACGCCTACTATCAGGCGCTGGCTGAGCTGCCGGAATGCGTGGCACCTTCGGAAGAAGAGCGGGCGATCATTCT CGAAACCCTGGTGGAACTCGATCAACTGCTGGACGGCCTGCCGGTGCTGGTCAAGCGAGCGTTCCTGATGTCGCAGGTCG ACGGGTTGAGCCACGGCCAAATTGCCGCCGAACTGGGCATCTCCATCGCAACGGTCAAACGCCATCTGAACAAGGCCGCA CTGCGCTGCTATTTCGCCTTATGA Protein sequence : MPIAHSALNHTVESLYRAHNTWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEPRAFLTTIAKRVLCNHYRRQD LEHAYYQALAELPECVAPSEEERAIILETLVELDQLLDGLPVLVKRAFLMSQVDGLSHGQIAAELGISIATVKRHLNKAA LRCYFAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 1e-32 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPPH_1093 | YP_273362.2 | RNA polymerase sigma factor | VFG1049 | Protein | 5e-33 | 50 |
