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Name : hopM1 (PSPPH_1266) Accession : - Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 1474976 - 1477211 bp Length : 2236 bp Strand : + Note : PSPPH1266; type III effector HopM1, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAO54897.1 DNA sequence : ATGAACACTCCGCGAATCGGTGGATCGGGCGCCATCGAGCTCTCCCGGATAAACCAGCAGCCCGATGCTATTCCCGCCCA GACCGCTCACCCGAATGCAGTGACGCCAGGCATGAATCCGCCGCTGACTCCCAATCAGGCAGGGCCGCACGCAGCAGAAA GCTCGGCTACCGGTGCCGCGCGGCTGAATGTTGCGGCGCGACACACGCAGCTTTTGCAGGCCTTCAAGGCTGAGCAGGCG ACAGCTCCGGTCAGCGGCGCGCCGATGATCAGCTCGCGTGCCGCGTTATTGATTGGCAGCTTGCTGCAGGCTGAAAAGCT GCCTTTTGAAGTCATGGCCGAGCGTCTCTCCCCTGAGCGCTATCAACTGAAGCAGTTTCATGGTTCGGACTTGCAACAAC TGCTGGACAAGTTTACCCAGCCGGGTCAGGTACCCGACAAAGCCGAAGTCGGTCAACTGATCAAGGGCTTCGCGCAATCG GTCGCCGATCAACTGGAGCACTTTCAGTTGATGCATGACGCTACGCCCACCAAGACAGGCCCGCATGCCAACGAGGATCG GGCGACGCTTGCCGTCAGTCAGACAGCCCTTGGCGAGTACGCCGGTCGTGCGAGCAAGGCAATCGGCGAAGGGCTGAGCA AAGGCATCGTGTCGCTGGATGATCACATCGCTGCACTGGATGTGAGCCTGCAAAGTGCCGAAGAGGGCGCCAAGGACGCT TTGCACTCTAACAGACAGGCGCTGGTTGATGCGAAAACCACTCTGGTCGGCCTGCACGCCGATTTCGTCAAATCGCCAGA GGCTAAACGCCTTGCTTCGGTCGCCGCACATACACAACTGGACACCGTCGTCAGTGATCTTGTCACTGCCCGCAACTCGG TTGGCGGCTGGAAAGGTGCCGGGCCGATTGTCGCAGCTGCGGTTCCACAGTTCCTGTCGTCAATGACGCACCTGGGTTAT GTGCGTTTGTCCACCAGTGACAAGCTGCGAGAGGAGGTGCCTGAGACCAGCAGCGACGCCAGTATGCTCAAGGCGGCGAT AACCGGAATGGTCACGGGCATTGCCCACGAGACAGTCAACAGCGTAGTGAAACCGGTGTTTCAGGCTACTTTTCAGAAAA CTGGCCTGAACGAACGGCTGAACATGGTGCCACTCAAGGCTATCGATACCAATTCGGTGATTCCTGACCCCTTCGAACTG AAAAGCGAGCACGGTGAGCTGATCAGAAAAACGCCCGAGGAAATCGCTCAGGACAAGGCATTCGTCAAGGGCGAACGCGC GGTGCTGAATCAGAAGAAGGTCCAGGGTTCGTCCACCCACCCGTTGGGTGAAATGATAGGTTACAGTGCCTTTGGTGGTT CACATGCCGTGCGCCAGATGCTCAACGATTTACACCAGATCAATGGTCAGACGCTGAGTGCAAGAGCCTTGGCATCCGGC TTTGGCGGGGCGGTGTCTGTCAGTTCGCAAACGCTTTTGCAGTTGAAGTCGACGTATGTCGATCCCGCAGGGCGCAAAAT TCCGGTATTCACGCCAGACCGAGCCGAGACAGAGCTGAAAAAGGATCTGGCCAAAGGTATGGACCTGCGCGAAGCCTCGG TACGTACCACGTTCTACAGCAAGGCAATATCCGGGTATTCAGAGCTCGGCGCTGACCTCGGCACTGCCGCCTGTGACAGC CCAGCTGGAAGGCGCGCGCGGTACGCTCAGTGCGGGGAATATCCTGCGCAATATGGCTCTGGTCGCAACGGGCTCGATTT CCTATCTGTCCACGCTTTACGCCAACCAGTCTGTCACCGCCGAAGCCAAGGCGTTGAAGGATGCGGGGATGGGGGGCGCA ACGCCGATGCTGGATCGTACCGAAACAGCCTTGAACAACATCCGCCATCCGAACAGGGCATCGCTGCCACATACCTTCCA GCCGAGCACGTTGAGCGGTATTCCAAGGGCTATGGAAAGCGCTTATCACATGGGACGAGGCGCGTTGCAGCTGCCAACCC AGATGGCCGTGGACACGGTTCGAGTGTTGGCAGACGGTGCGCTGAACGGCGTGTCGTCAGCACGCGCTGCGCTTACGCCA GCAAAACCGCCTGAAGCTCGCGTGTCCGTCGACGAGCTCCGGAACACGGCCCCAACGCCGCCATCCAGCCCCACAGTGCA GCGGCCGGCACCCTCCGTTCCGCTTGACGACGAGCAGTTGCGGGCGCTCGAAGAAAGCTTGCTCGCTCCGCGTTGA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAF71501.1 | unknown | Not tested | Hrp PAI | DNA | 0.0 | 86.2 |
| hopM1 | NP_791202.1 | type III effector HopM1 | Virulence | Hrp PAI | DNA | 0.0 | 85.6 |
