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Name : secD (PSPPH_1302) Accession : YP_273560.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1513416 - 1515284 bp Length : 1869 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATACATACTGATCCTGGCGGTGCTGGTGGTCGGTTTTATTTATTCCGCACCCAA TCTCTACCCTGATGATTCTGCCATCCAGATCAGCGGTGCAAGTACTGCACTGCAAGTCAATCAGGCAGACGTGGATCGTG CAGCCAAGGCGCTTGCCGATGCAGGCATCTCGGTCAAGGCTTCTTCTCTGGCCGAGAATGGCAAGGGAGGTTTGTTGCGT CTGAGCAAGCAGGAAGACCAGTTGTCGGCCAAGGATGTCGTGCGCAAGGCGCTGGGTGACGACTATGTCGTTGCGCTGAA CCTGGCGCGTACCACGCCGACCTGGTTGCGTAACCTGGGTGCAAGCCCGATGAAACTCGGTCTCGACCTGTCCGGTGGTG TGCACTTCCTGCTGGAAGTCGACATGGACAAGGCGATTGATGCACGTCTGAAAGTCTACGAAGGCGAAGTAAAATCCCTG TTGCGCAAGGAAAAAGTGCGTTATCGCAGCCTGCCGCAGCTGGGCAATGTGATTCAGCTGGGCTTTAGCGATGACGCAGA GCGCGAGCAGGCTCGTGCACTGGTGCGCAAGACCTTCACCGATTTCGAAATCACGCCTGCCGAGCTGAACGGCATTCCCG TGCTGCGCATGGCGTTGACGCCGGCCAAGCTGGCCGAGATTCGCGAATACTCGATCAAGCAGAACCTGACTACCGTGCGT AATCGGGTCAACGAGCTGGGTGTTGCCGAGCCGCTGGTTCAGCGCCAGGGTGCCAACCGCATCGTGGTCGAGCTGCCGGG TGTGCAGGACACGGCCGAAGCCAAGCGTATTCTGGGCAAGACCGCCAACCTCGAATTCCGTCTGGGTGCAGGCCCGGATG ATTCGAAAGGCACCACCGAAATGTTCGAATTCCGCGAAGGCGGTCGTCCGGCAGCGGCGGTGGAGCGTGGTCTGATCATC ACCGGCGATCAGGTGACTGACGCCAAGGCCAGCTTCGACGAGCATGGCCGTCCACAGGTGAACATCAATCTTGATGGCCA CGGTGGCGAGCTGATGAGCCGCGCAACCCGCAGTAATGTGGGTCGCAGCATGGCGGTGATCTTCATTGAGCAGCGTCCGA CCACCACTTACACCAAGCAGATGGTCAACGGCGTCGAGAAAGACGTGCCGGTGCAGACCTTCAAGGAAGAAAAGAAAATC ATCAGTCTGGCGACCATTCAGTCGCCGCTGGGCAGTCAGTTCCGGATTACCGGTCTGAACGGTCAGGGTGAGTCTTCCGA GCTGGCGCTGCTGTTGCGTGCCGGTGGTCTGGCGGCACCGATGTACTTCGCTGAAGAACGTACCATTGGCCCGAGCCTGG GTGCCGACAACATTACCAAGGGTATCGATGCTTCCCTGTGGGGCATGCTGTTCGTCTCGCTGTTCATCATGGCGATCTAC CGATTCTTCGGTCTGATCGCGACCGTCGCACTGGCCTTGAACATGGTCATGCTGCTGGCACTGATGTCCTTGCTGGGTGC AACACTGACCCTGCCAGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTGGATGCCAACGTGCTGATCTTCTCGC GTATTCGTGAAGAGATCGCCAATGGCATGACGGTCCAGCGCGCTATCAACGAAGGTTTCGATCGTGCCTACACTGCGATC CTCGACGCCAACCTGACGACGCTGCTGGTCGGCGGCATTCTCTTTGCGATGGGCACTGGCCCGGTCAAAGGGTTTGCGGT GACCATGTCGCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCTATGGTCAACCTGATCTACGGCG GTCGTGACTTCAAGAAGTTGTGGATTTAA Protein sequence : MLNKYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALADAGISVKASSLAENGKGGLLR LSKQEDQLSAKDVVRKALGDDYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL LRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFEFREGGRPAAAVERGLII TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKI ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIY RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAI LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 98 |
