Gene Information

Name : PSPPH_2747 (PSPPH_2747)
Accession : YP_274936.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3179070 - 3179609 bp
Length : 540 bp
Strand : +
Note : identified by match to protein family HMM PF04542

DNA sequence :

TTGGCGCACCCATCGCTCAAGGCTTTTGACATGACTGAAGCAGCGACGCTATCACAGCAGACCTTGCATTCCCTTTACCG
CGATCATCATGGCTGGCTGGAAAGCTGGTTGCGCAGACGCATGGGGAATGCCTGGGATGCTGCGGACCTGAGTCAGGATA
CGTTCCTGCGTGTACTGTCCAGCTCTCAGCAGATCGCCGATATGCAGGAGCCACGCGCTTACCTGCTGACGGTGGGCAAG
CGCCTGCTCAGTAACTTCTATACTCGCCGCAGCCTGGAACAGGCTTACCTTGAAGCGCTGGCGCAGTTGCCTGAAGACAG
CGTGCCGTCGCCTGAGCAGCGCTGGCTGTTGCTGGAAACCCTGCAGGCGCTGGACGAGTTGCTCGACGGTCTTTCGGCAG
TGGTGCGCCGGGCGTTTCTCTGGAGCCAGCTCGAGGGGCTGGGGTATCGGGAAATCGCAGAGCGCCTGGATGTTTCCGAA
CGCACCGTCAAACGTTATATGGCGCAAGCCTACGAACACTGCCTGCTGGTGGATTGGTGA

Protein sequence :

MAHPSLKAFDMTEAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQEPRAYLLTVGK
RLLSNFYTRRSLEQAYLEALAQLPEDSVPSPEQRWLLLETLQALDELLDGLSAVVRRAFLWSQLEGLGYREIAERLDVSE
RTVKRYMAQAYEHCLLVDW

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-29	53

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSPPH_2747	YP_274936.1	ECF subfamily RNA polymerase sigma factor	VFG1049	Protein	2e-29	53