|
Name : glcD (PSPPH_3252) Accession : YP_275412.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 3769666 - 3771165 bp Length : 1500 bp Strand : + Note : identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 DNA sequence : ATGAATATTCTTTATGACGAACGCATCGACAGCGCGCTGCCCGCAGTCGACAAGCAACAATTGCTGCACGAGCTACGACG CCAACTGCCCGACCTGGACATTCTGCACCGCGCCGAAGAGCTTCGGCCCTACGAGTGCGACGGGTTATCGGCCTATCGCA CCACGCCGATGCTGGTGGTGCTGCCACGCCATGTCGAAGAAGTGCAGACGCTGCTCAAACTGTGCCATGCGCATCGCGTG CCGGTGGTCGCTCGCGGCGCGGGCACCGGGTTGTCGGGTGGCGCACTGCCACTGGAGAAAGGCGTGCTGCTGGTGATGGC GCGCTTCAATCAGATCCTCGCTATTGATCCGGCTGCTCGTCTGGCGCGGGTCCAGCCCGGCGTACGCAACCTGGCCATTT CCCAGGCAGCAGCACCCCACGGTCTGTATTACGCACCCGACCCTTCCTCGCAAATCGCCTGTTCCATCGGCGGCAACGTG GCAGAAAATGCAGGCGGCGTGCATTGCCTCAAATACGGACTGACCGTACACAACCTGCTCAAGGTTGAGATACTGACCGT CGAAGGCGAGCCAATGACCCTGGGCAGCGACACGCTGGACTCACCGGGCTTCGACTTGCTGGCACTGTTTACCGGCTCCG AAGGCATGCTCGGTGTCATTACCGAAGTCACGGTCAAGCTGTTGCCCAGGCCGCAAGTGGCCAAAGTGCTGCTGGCGGCG TTCGATTCCGTGGAAAAAGCCGGCGGTGCGGTGGCCGATATCATTGCCGCAGGCATCATCCCCGGCGGGCTGGAGATGAT GGACAATCTGGCGATTCGTGCCGCCGAGGATTTCATTCACGCAGGCTATCCGGTTGATGCAGAAGCCATCCTGCTTTGCG AGCTGGACGGGGTCGAAGCCGATGTACATGCCGATTGCGAACGGGTTCGCGAGGTATTGACACTGGCTGGCGCAACCGAA GTGCGTCAGGCGAAAGACGAGGCCGAACGGGTGCGCTTCTGGGCTGGGCGCAAGAACGCCTTCCCCGCCGTGGGCCGTCT GTCACCGGATTACTACTGCATGGACGGCACTATCCCGCGACGCGAGTTGCCAGGGGTATTGCGCAGCATCAAGGAGTTGT CAGCTCAGTACGGCCTGCGCGTGGCAAATGTGTTCCATGCTGGCGATGGCAACATGCACCCGCTGATCCTGTTCGATGCC AATCAGCCGGGTGAGCTGGAGCGCGCCGAGGCGCTGGGCGGCAAGATCCTTGAGCTGTGCGTCGAGGTCGGCGGCAGCAT CACCGGCGAGCACGGTGTCGGTCGCGAGAAGATCAACCAGATGTGCGCGCAGTTCAACAGTGACGAACTGACTTTTTTCC ATGCCATCAAGGCCGCATTCGACGCCAGCGGCCTGCTCAATCCCGGCAAGAACATCCCGACCCTGCATCGCTGCGCGGAA TTCGGTGCCATGCATATTCATGCCGGGCAATTGCCGTTTCCCGAACTGGAGCGCTTCTGA Protein sequence : MNILYDERIDSALPAVDKQQLLHELRRQLPDLDILHRAEELRPYECDGLSAYRTTPMLVVLPRHVEEVQTLLKLCHAHRV PVVARGAGTGLSGGALPLEKGVLLVMARFNQILAIDPAARLARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNV AENAGGVHCLKYGLTVHNLLKVEILTVEGEPMTLGSDTLDSPGFDLLALFTGSEGMLGVITEVTVKLLPRPQVAKVLLAA FDSVEKAGGAVADIIAAGIIPGGLEMMDNLAIRAAEDFIHAGYPVDAEAILLCELDGVEADVHADCERVREVLTLAGATE VRQAKDEAERVRFWAGRKNAFPAVGRLSPDYYCMDGTIPRRELPGVLRSIKELSAQYGLRVANVFHAGDGNMHPLILFDA NQPGELERAEALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDELTFFHAIKAAFDASGLLNPGKNIPTLHRCAE FGAMHIHAGQLPFPELERF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 0.0 | 82 |
