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Name : PSPPH_4765 (PSPPH_4765) Accession : YP_276865.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 5409325 - 5409843 bp Length : 519 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : GTGTCGTCAGTCCCAAGCACTCATAGCGAGATTGTTGGCGCGCTGTATCGCGATCATCGTGGTTGGCTGCTGGCCTGGCT CAGACGCAATGTCGCCTGTCCACAGCGTGCTCAGGATTTGAGTCAGGACACGTTCGTGCGTTTGCTCGGGCGACAGGAAT TGCTGACGCCCAGAGAGCCTCGAGCGTTCCTGGCGGCCGTTGCCAAGGGACTGATGTTCGACTACTTCCGCCGCGCTGCG CTGGAGCAGGCTTATCTCGGGGAGTTGATGCAGGTTCCCGAGGCCGAGCAGCCTTCGCCGGAAGAGCAGATGCTGATTCT GGAAGACCTCAAAGCGATCGACCGTATGCTGGGCAGCCTCTCCAGCAAAGCACGGGCAGCCTTTCTGTACAGTCGCCTCG ACGGGCTGAGCCACGGCGAAATTGCCGAGCGGCTGGGCGTCTCGGTTTCGCGCGTCAGGCAATACCTGGCTCAAGCCATG CGTCAGTGCTATGTAGCGCTCTACGGTGAGCCGACATGA Protein sequence : MSSVPSTHSEIVGALYRDHRGWLLAWLRRNVACPQRAQDLSQDTFVRLLGRQELLTPREPRAFLAAVAKGLMFDYFRRAA LEQAYLGELMQVPEAEQPSPEEQMLILEDLKAIDRMLGSLSSKARAAFLYSRLDGLSHGEIAERLGVSVSRVRQYLAQAM RQCYVALYGEPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 1e-33 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPPH_4765 | YP_276865.1 | RNA polymerase sigma factor | VFG1049 | Protein | 4e-34 | 47 |
