Gene Information

Name : pYV0086 (pYV0086)
Accession : YP_068495.1
Strain :
Genome accession: NC_006153
Putative virulence/resistance : Virulence
Product : yscJ, ylpB; type III secretion lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 59744 - 60478 bp
Length : 735 bp
Strand : +
Note : similar to Y. pestis YPCD1.59

DNA sequence : 
GTGAAAGTTAAGACTTCACTGTCAACATTGATATTAATCTTGTTTTTAACTGGTTGCAAAGTTGATCTTTATACCGGAAT
TAGTCAGAAGGAAGGGAACGAAATGCTTGCGCTGTTGCGCCAAGAAGGCCTTTCCGCAGACAAAGAGCCAGACAAAGATG
GGAAGATTAAGCTCTTGGTTGAGGAGTCAGATGTCGCTCAGGCTATTGATATTCTCAAACGGAAGGGCTATCCACACGAG
AGTTTCTCCACGTTACAGGATGTGTTCCCCAAAGATGGGTTGATATCTTCACCGATAGAAGAGTTGGCGAGGCTTAATTA
TGCCAAGGCGCAAGAGATCTCCCGCACTTTATCTGAAATTGACGGGGTATTAGTGGCTCGAGTGCATGTCGTATTGCCTG
AAGAGCAAAATAACAAAGGTAAGAAGGGTGTAGCAGCATCCGCTTCGGTTTTTATCAAGCATGCAGCAGATATTCAGTTT
GATACCTACATACCTCAGATTAAACAATTAGTGAATAATAGTATTGAGGGGCTGGCCTATGATCGCATCAGTGTCATTTT
GGTGCCATCGGTAGATGTTCGTCAAAGCTCTCATTTACCTCGTAACACGAGCATACTGTCAATTCAAGTGAGTGAAGAGT
CAAAAGGGCATCTTATTGGCTTGTTGTCGTTGCTTATTTTGCTTTTGCCAGTGACCAATCTTGCTCAATATTTTTGGTTA
CAACGCAAGAAGTGA

Protein sequence : 
MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE
SFSTLQDVFPKDGLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIKHAADIQF
DTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLPRNTSILSIQVSEESKGHLIGLLSLLILLLPVTNLAQYFWL
QRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 6e-76 76
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pYV0086 YP_068495.1 yscJ, ylpB; type III secretion lipoprotein VFG0409 Protein 9e-97 100
pYV0086 YP_068495.1 yscJ, ylpB; type III secretion lipoprotein VFG0218 Protein 5e-73 74
pYV0086 YP_068495.1 yscJ, ylpB; type III secretion lipoprotein VFG0051 Protein 1e-31 41