|
Name : YPTB2169 (YPTB2169) Accession : YP_070686.1 Strain : Yersinia pseudotuberculosis IP 32953 Genome accession: NC_006155 Putative virulence/resistance : Virulence Product : toxin ABC transporter ATP-binding/permease Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 2548767 - 2550914 bp Length : 2148 bp Strand : + Note : similar to Xylella fastidiosa XF2397 toxin secretion ABC transporter ATP-binding protein (44.7% evalue=1.E-155); Vibrio cholerae VC1448 RTX toxin transporter (49.6% evalue=0) DNA sequence : ATGGAAAATCATGTTCATTCCGCGCTGATATGTGCATCCAGATTGATTCGGTTGGCCGGGTTAAATCCAATGGATATCGA GACATTTAGCCAAAAGGTCGCCATAGACACCTCAGTAAAAACAACGCTAGCGTCTCTTCAGCGTTATATCGTTCAATTTT CACAAACAGCTTCTGTCCGTTTTAAAATACGTAAGCAAGCATTGGAAAAAATAAGGCAGGAGCAGTTACCGCTGGCATTT CGTGACCGTCAGGGGAATTTTATCTTGCTGGCGCGGATGAATGAACAACAAGTGTTATTACAGTACGCTGATGATAAAAA ACCACAAATGTTAAGTTATCAATCACTTGCTGACATGTGGGGTGGAATGATCTTATGCTGTAGTCATTCGCGCTTTGATA TTCGCTGGTTTATCCCGCCACTACGTCGCCATCGTAAGCCATTAATGCAAGTCCTATTGTTATCATTATTGCTGCAATTC CTAGCGTTGATCTCCCCTCTCTTTTTTCAAGTTATCATGGACAAAGTACTCGTTCATCATGCATTAACCACACTGGAAGT GCTAATCTTCATCTTAGTCATTGTCGGTGTGTATGAGGTTATATTAAAAGGCTTGCGAGAATATATTTTTACGCATACGA CAACACGAGTGGATATATTATTAGGCGGGAAGTTGTTTCAACATTTAATCAGGTTGCCGTTAAGTTACTTTAAACAACGT CATGTCGGTAATATTGTTGCCAGAGTCCGTGAGTTAGATAATATCCGTGATTTCATCACGGGTTCGGCCCTGACATTATG TGTTGATGTGGTTTTTACCTTCGTGTTGTTTATTGTTATGTGGTGTATATCCCCGTTATTAACCTTAATAATACTGAGCA CGTTGCCTTTTTATCTGTTATTGGCCGTGATGACCACTCGGCCGTTGCAAAAAAAAGTGGAGGCTCTCTGTGGTTTTGCT GCGCAAAACGGCGCGTTTTTGACTGAAACGGTGTCTGGGGTGGAAACCGTAAAAAGTTTGGCGCTGGAGCCACGGATGCG CCAGCGCTGGGAAAGCCAAACTCGTGATTTTGCTCAGGCTAATTTTCAGGTACAAAATTTGCAAAATCTCAGTAGCCAAG CGGCTCAACTCTTGCAAAAGGTGGCTGGCGCACTGGTGATCGTGATAGGTGCGTATCACGTTATGTTTGTACAGCTCAGT ATTGGTCAGTTGATTGCATTTAATATGTTGGCACTACAGGCATTAATGCCGATGAGTAAACTGGTTGATTTATGGCAGCA GAGCATCCGTGCGCAGGTTGGGCTGAAATTAATATCAGATATTCTAAGCTTGCCGGTTGAACCGGAGGCAGATCCGGCGG CCCCGCACCCTGCGATTAGCGGCAATATCCTACTAAAAAATGTGGCCTTCCGTTATCGCCCCGATCTTGATCCTGTCTTA CATGATTTAAACTTATCTATCCGCGCGGGTGAACATATCGGGTTGGTGGGGCCGTCAGGATCGGGGAAAAGCACCGTGGC CCGGTTATTACAACGGCTCTATAACACCGAACAAGGGGTCATTACGATAGATGGTTATCCGATCAACCATTTATCACCAG AATATTTACGGCGACAAGTGGGGGTGGTGATGCAGGAAAGCTATCTGTTTAACCGCACCGTGCGAGAAAATATTGCCCAT TCACGGCCAACAGCCACCTTGACCGAGGTGGTCAATGCCGCCAGTTTAGCGGGTGCTAACGCCTTTATTTTGGCGCTACC TTTAGGGTATGACACGGTTTTATCTGAAGGTGGTTCATCCTTATCTGGTGGGCAACGTCAACGTATTGCCATTGCTCGCA CTCTGCTCGCGAATCCCCGGATCTTAATTTTTGATGAAGCGACCAGCGCACTGGATGATGAGTCTCAGTCGGAGATTCAG AAAAACATGGCCCGCATTATCGCCAATCGCACGGTTATTACGATTGCCCATCGCCTATCGACCGTTCGTCACTGCCACCG TATTGCCGTGATAACACAAGGCCGAGTCACCGAACTTGCCAGCCATGACGAATTACTGCAATTAAACGGCAGTTACGCTC GGCTTTGGCAACAACAAGTTCATTTTAACCAAAACAAGTCCACTTTAACTAAAACAAGTCCACCTTAA Protein sequence : MENHVHSALICASRLIRLAGLNPMDIETFSQKVAIDTSVKTTLASLQRYIVQFSQTASVRFKIRKQALEKIRQEQLPLAF RDRQGNFILLARMNEQQVLLQYADDKKPQMLSYQSLADMWGGMILCCSHSRFDIRWFIPPLRRHRKPLMQVLLLSLLLQF LALISPLFFQVIMDKVLVHHALTTLEVLIFILVIVGVYEVILKGLREYIFTHTTTRVDILLGGKLFQHLIRLPLSYFKQR HVGNIVARVRELDNIRDFITGSALTLCVDVVFTFVLFIVMWCISPLLTLIILSTLPFYLLLAVMTTRPLQKKVEALCGFA AQNGAFLTETVSGVETVKSLALEPRMRQRWESQTRDFAQANFQVQNLQNLSSQAAQLLQKVAGALVIVIGAYHVMFVQLS IGQLIAFNMLALQALMPMSKLVDLWQQSIRAQVGLKLISDILSLPVEPEADPAAPHPAISGNILLKNVAFRYRPDLDPVL HDLNLSIRAGEHIGLVGPSGSGKSTVARLLQRLYNTEQGVITIDGYPINHLSPEYLRRQVGVVMQESYLFNRTVRENIAH SRPTATLTEVVNAASLAGANAFILALPLGYDTVLSEGGSSLSGGQRQRIAIARTLLANPRILIFDEATSALDDESQSEIQ KNMARIIANRTVITIAHRLSTVRHCHRIAVITQGRVTELASHDELLQLNGSYARLWQQQVHFNQNKSTLTKTSPP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 9e-108 | 45 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 7e-108 | 45 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 7e-108 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPTB2169 | YP_070686.1 | toxin ABC transporter ATP-binding/permease | VFG0841 | Protein | 2e-101 | 46 |
| YPTB2169 | YP_070686.1 | toxin ABC transporter ATP-binding/permease | VFG1269 | Protein | 8e-111 | 45 |
| YPTB2169 | YP_070686.1 | toxin ABC transporter ATP-binding/permease | VFG0907 | Protein | 4e-108 | 45 |
| YPTB2169 | YP_070686.1 | toxin ABC transporter ATP-binding/permease | VFG1557 | Protein | 4e-108 | 45 |
| YPTB2169 | YP_070686.1 | toxin ABC transporter ATP-binding/permease | VFG1501 | Protein | 4e-108 | 45 |
