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Name : secD (MS1563) Accession : YP_088755.1 Strain : Mannheimia succiniciproducens MBEL55E Genome accession: NC_006300 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1555928 - 1557778 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAATCGCTACCCTTTATGGAAGAATCTAATGGTGATCCTTGTGATCGCCATTGGCGTTTTATACGCGCTTCCAAA TATTTACGGTGAGGATCCGGCGGTCCAAATTTCGGGTACCAGAGGACAAACCGCCACCGAAACAACTCTAACCGATGTAC AGACATTATTAACATCAAATCAACTGGAACCTAAATCTATCAAATTAGAAGAAGGTTCGATTCTTGCTCGTTTTCACAAT ACCGACGACCAGTTGCTTGCTAAAGATAAAATTACTGAAAAATTAGGTCAGTCTTATTCCGTTGCGCTCAATCTTGCTCC TTCAACACCTGCTTGGTTAAGCAGCATCGGCGGCAACCCGATGAAATGGGGGCTTGATTTACGCGGTGGGGTTCGTTTTC TGATGGAAGTGGATATGAATACGGCACTGTCTAAACGTCAGGAACAATTACAAGACAGTTTACGCACGGAATTACGCAAA GAAAAAATCCAGTATTCCGCAATTAAAAATACGGATAACTTCGGTACCGGTGTAACCTTAGTAAAACCGGAACAATTATC CGATGCCGGCCGTTTTTTACGTAAACAGCACCCGAATTTAAATATTACCGAGTCCGCCGATAACACATTAAATCTGGCTT TATCGGAACAGGCACTAACCGAAGCGCGTGAAAATGCTGTAGAACAAAACCTGGGCATTTTACGTAAACGGGTGGAAGAA CTTGGTGTTTCCGAAGCGGTTATTCAACGCCAGGGTGCGGAACGTATCGTTGTTGAATTGCCGGGGATTCAGGATACCGC CCGGGCAAAAGAAATTTTAGGAGCGACCGCCACCTTAGAGTTCCGCCTTGTGAACCAAAATGTCAGTCCTGAAGCTATGG TGCGTAATATTGTGCCGACGGATACCGAAGTCAAATTTATGCGTGACGGTCAGCCGGTAGCGTTATTTAAACGCGCGGTA CTCGGTGGCGAACATATTACCAATGCAAGTTCCGGGCTTGATCAACAAACCTCCCGTCCTCAGGTTAGCGTAACCTTAGA CAGCGAAGGCGGCGAGATTATGGCTGATACAACCCGCTTAAACATCAAAAAACCGATGGCTACTTTATACGTTGAATATA AAGACAGCGGTAAAAAAGATGAAAACGGTAAAGTTATCCTAGAAAAACATGAAGAAGTGATTAACGTGGCTACCATTCAG GGTCGTTTCGGCAGTCAGTTCCAAATTACGGGTATCGATAGCCCCGCCGAAGCACAAAACCTTTCCGTATTATTACGTTC CGGTGCTTTAACCGCACCGATTCAGATTGTTGAAGAACGTACGGTCGGCCCGTCTTTAGGTGCGCAAAACGTGGCGCAAG GCTTAAATGCGGGGCTTTGGGGGTTGGCGATAGTGATCGTTTTCTGTCTGGTTTTCTACAAAGTTTTCGGTTTAGTGGCA AGTTTAGCCTTATGTGCAAACATGGTGCTTGTGGTCGGGTTAATGTCATTGCTTCCGGGCGCGACGCTGACCATGCCTGG TATTGCGGGTATTATCCTGTCCGTTGGGATGTCGGTGGACGCCAACGTACTGATTTTTGAGCGGATCAAAGAAGAACTGC GCAACGGCCGTCCTATCCAACAAGCCATTAACGAAGGTTATAATGGAGCCTGGACATCCATTTTCGATGCCAACCTCACT ACCATTTTAACCTCTATCGTCCTTTATGCGGTAGGTACCGGCCCGGTTAAAGGCTTTGCCGTAACCCTTGCACTCGGTGT GGCAATCTCAATGTTTACTGCTATTACCGGCACGCGTATGCTGATAAACTGGATTTACGGCGGTAAACGTGTTGAGAAAT TATCAATTTAG Protein sequence : MLNRYPLWKNLMVILVIAIGVLYALPNIYGEDPAVQISGTRGQTATETTLTDVQTLLTSNQLEPKSIKLEEGSILARFHN TDDQLLAKDKITEKLGQSYSVALNLAPSTPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSLRTELRK EKIQYSAIKNTDNFGTGVTLVKPEQLSDAGRFLRKQHPNLNITESADNTLNLALSEQALTEARENAVEQNLGILRKRVEE LGVSEAVIQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQNVSPEAMVRNIVPTDTEVKFMRDGQPVALFKRAV LGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMADTTRLNIKKPMATLYVEYKDSGKKDENGKVILEKHEEVINVATIQ GRFGSQFQITGIDSPAEAQNLSVLLRSGALTAPIQIVEERTVGPSLGAQNVAQGLNAGLWGLAIVIVFCLVFYKVFGLVA SLALCANMVLVVGLMSLLPGATLTMPGIAGIILSVGMSVDANVLIFERIKEELRNGRPIQQAINEGYNGAWTSIFDANLT TILTSIVLYAVGTGPVKGFAVTLALGVAISMFTAITGTRMLINWIYGGKRVEKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 9e-124 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 9e-124 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 9e-124 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-124 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-124 | 45 |
