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Name : glcD (BPSL2843) Accession : YP_109437.1 Strain : Genome accession: NC_006350 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 3404327 - 3405820 bp Length : 1494 bp Strand : + Note : Similar to Escherichia coli, and Escherichia coli O6 glycolate oxidase subunit GlcD or Gox or b2979 or c3709 SWALL:GLCD_ECOLI (SWALL:P52075) (499 aa) fasta scores: E(): 4.2e-114, 59.91% id in 479 aa, and to Ralstonia solanacearum probable glycolate oxidas DNA sequence : ATGAACGCCCCCGCCGAACTGTCGGCCGATCTGCGCGCGCAGCGCCAGCGCGAAGTCGTGCAGGCGCTGATGGCCGTGCT GCCGACCCATTGCCTGCTGCATCGCGACGAGGACACGGCCGCGTACGAATGCGATGCGCTGTCCGCATACCGCCGGCTGC CGCTCGCGGTGGCGCTGCCGGAGACCGAATCGCAGGTGCAGCGGATCGTGCAGATCTGCCGGCGCATGAACGTGCCGATC GTGCCGCGCGGCGCGGGCACGAGCCTGTCGGGCGGCGCGCTGCCGATCGGGCACGGCGTCGTGCTGTCGCTCGCGCGCTT CACGCGGATCGTCGAAGTCGATTCCTATGCGCGCACGGCCACCGTTCAGCCCGGCGTGCGCAATCTCGCGATCTCCGAGG CCGCCGCGCCGTACGGCCTCTACTACGCGCCCGATCCCTCGTCGCAGATCGCGTGCACGATCGGCGGCAACGTGTCGGAG AACTCGGGCGGCGTTCATTGCCTGAAATACGGGCTCACATGCCATAACGTGCTGCGCGTGCGCGGCGTGACGATCGACGG CGAGATCGTCGAGTTCGGCTCGCTCGCACCCGACGTGCCGGGCCTCGATCTGCTCGCCGTCACGATCGGCAGCGAAGGCA TGTTCATCGTCGTCACCGAGGTGACGGTGCGGCTGATCCCGAAGCCGCAGTGCGCGCAGCTCGTGATGGCGAGCTTCGAC GACGTCGTCAAGGGCGGCGAGGCCGTTGCCGCGATCATCGCGTCGGGCATCATTCCGGCCGGGCTCGAGATGATGGACAA ACCCGCGACGCAGGCGGTCGAGGCGTTCACGCACGCGGGCTACGATCTCGACGCGGCCGCGATCCTGCTGTGCGAATCGG ACGGCACACAGGAGGAAGTCGCCGAGGAGATCGTGCGGATGACCGCGGTGCTGCGCGAGCACGGCGCGACGCGCATCCAG GTCTCGCGCAGCGAGGCCGAGCGGCTGCGCTTCTGGTCGGGCCGCAAGAACGCGTTCCCGGCCGCGGGCCGCATTTCGCC CGACTATTACTGCATGGACGGCACGGTGCCGCGCCGCGCGATCGGGCCGCTCCTCGCGCGCATCGAGCAGATGGAGACGA AGTACGGGCTGCGCTGCATCAACGTGTTCCACGCGGGCGACGGCAACATGCACCCGCTCATCCTGTTCAACGCGAACGAC GTCGACGAGCTGCACCGCGCGGAGGCGTTCGGCGCGGACATCCTCGAGACCTGCGTCGAATTCGGCGGCACGGTGACGGG CGAGCACGGCGTCGGCGTCGAGAAGCTGAACTCGATGTGCGTGCAGTTCTCGCGCGAGGAGTGCGATGCGTTCTTCGCGG TCAAGCGCGCGTTCGATCCGCCCGAGCTGCTGAATCCGGACAAGGGCATTCCGACCCGCGCGCGCTGCGCCGAATACGGC CGGATGCACGTGCGCGGCGGGCTGCTGCCGCATCCGGACCTGCCGCGCTTTTGA Protein sequence : MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALPETESQVQRIVQICRRMNVPI VPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTATVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSE NSGGVHCLKYGLTCHNVLRVRGVTIDGEIVEFGSLAPDVPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEVAEEIVRMTAVLREHGATRIQ VSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRAIGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNAND VDELHRAEAFGADILETCVEFGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG RMHVRGGLLPHPDLPRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-128 | 59 |
