|
Name : hpcD (BPSS0696) Accession : YP_110710.1 Strain : Genome accession: NC_006351 Putative virulence/resistance : Unknown Product : 5-carboxymethyl-2-hydroxymuconate delta-isomerase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG3232 EC number : 5.3.3.10 Position : 937472 - 937864 bp Length : 393 bp Strand : + Note : Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpcD SWALL:HPCD_ECOLI (SWALL:Q05354) (125 aa) fasta scores: E(): 2e-18, 48.41% id in 126 aa, and to Ralstonia solanacearum 5-carboxymethyl-2-hydroxymuconate delta-isomerase rsc2 DNA sequence : ATGCCTCACATCATCGTCGAATACACCGCGAACATTCGCGACGACGCACGGATACCCGTGCTGCTCAAGTCGATCAACGA GACGCTGATCGCGCAGGGCGGCGTGTTTCCGACGGGCGGCATCCGCTCGCGCGCGATCGAGCTGCAGGACTACTGCGTCG CGGACGGCACCGCCGACGACGCGTTCGTGCACGTGACGCTGAAGATCGGCGCGGGCCGCGACGACGCGACGAAAAAGGCC GCGTGCGACGCGCTGTTCGATGCGATCAAGGCGCACTTCGAGGCGCTCTATGCGCGGCGCTATCTCGCGCTGTCGATGGA GCTCGCCGAGTTCAGCGAGACGGGCTCGTACAAGCACAACAACATCCACGCACGCTACAAGCGCGGCGCGTGA Protein sequence : MPHIIVEYTANIRDDARIPVLLKSINETLIAQGGVFPTGGIRSRAIELQDYCVADGTADDAFVHVTLKIGAGRDDATKKA ACDALFDAIKAHFEALYARRYLALSMELAEFSETGSYKHNNIHARYKRGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hpaF | AAO17181.1 | HpaF | Not tested | tcd island | Protein | 6e-25 | 49 |
