|
Name : clpB (nfa54020) Accession : YP_121618.1 Strain : Nocardia farcinica IFM 10152 Genome accession: NC_006361 Putative virulence/resistance : Virulence Product : Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 5704757 - 5707318 bp Length : 2562 bp Strand : - Note : - DNA sequence : GTGGACTCGTTCAACCCCACCACCAAGACCCAGGCGGCCCTGACCGCGGCCTTGCAGGCCGCCTCGGCCGCGGGCAACCC GGAGATCCGGCCCGCACACCTGTTGGTGGCGTTGCTGGATCAGACCGACGGCATCGCCGCACCGCTGCTCAAGGCCGTCG GGGTGGACCCGGCGACGGTGCGGCGGGAGGCGCAGGACCTCGTCGACCGGCTGCCCCGCGCCACCGGCGCGACCACCCAG CCGCAGCTGGGCCGGGAGGCGCTGGCCGCCATCACCGCCGCGCAGCGGCTGGCGACCGAACTCGGTGACGAGTACGTCTC CACCGAACACGTCCTGGTGGGGCTGGCCGACGGCGATTCCGACGTCACGATGCTGCTGAAGAAGTACGGCGCCACCGCCG ACGCGCTGCGCGAGGCATTCACGACCGTGCGCGGCAGCGCGCGCGTCACCACGCCCGACCCCGAGGCCACCTACCAGGCG CTGGAGAAGTACTCCACCGATCTCACCGAGGCCGCGCGCACCGGCAAGCTCGATCCGGTGATCGGCCGGGACACCGAGAT CCGCCGCGTCGTGCAGGTGCTGAGCCGGCGCACCAAGAACAACCCGGTGCTGATCGGTGAGCCCGGCGTCGGCAAGACCG CGATCGTGGAGGGGCTCGCCCAGCGCATCGTGGCCGGTGACGTGCCGGAGTCGCTGCGCGGCAAGAAGGTGATCTCGCTG GATCTGGGCGCGATGGTGGCGGGTGCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTCAAGGCCGTGCTCGAGGACATCAA GAACAGCGCGGGCCAGATCATCACGTTCATCGACGAGCTGCACACCATCGTCGGCGCGGGCGCGACCGGCGAATCGGCGA TGGACGCGGGCAACATGATCAAGCCGATGCTGGCGCGCGGTGAGCTGCGGCTGGTCGGCGCGACCACGCTGGAGGAGTAC CGCCAGCACATCGAGAAGGACGCCGCGCTCGAGCGGCGCTTCCAGCAGGTGCTGGTCGGTGAGCCCTCGGTGGAGGACAC CGTCGGCATCCTGCGCGGCATCAAGGAGCGCTACGAGGTGCACCACGGCGTGCGGATCACCGACTCGGCGCTGGTGGCCG CGGCGGCGCTGTCCGACCGCTACATCACCTCGCGTTTCCTGCCGGACAAGGCGATCGACCTGGTCGACGAGTCCGCTTCC CGGCTGCGCATGGAGATCGACTCCCGCCCGGTCGAGATCGACGAGGTCGAGCGCGCGGTGCGGCGGCTGGAGATCGAAGA GGTCGCGCTGAGCAAGGAGACCGACGAGGCCTCCAAGTTGCGGCTGGAGAAGCTGCGCCAGGAACTGGCCGACGACCGGG AGAAGCTGAACCAGCTGATGACCCGGTGGCAGAACGAGAAGAGCGCTATCGACCAGGTCCGCACGCTCAAGGAACAGCTC GAGGCGCTGCGCGGGGAGTCCGAGCGGGCCGAGCGCGACGGCGATCTGGGCAAGGCCGCCGAGCTGCGCTACGGCCGCAT CCCCAGTCTGGAGAAGCAGCTGGCCGAGGCCGAGAAGGCCTCCGGTGCGGCCGCCGACGGCGAGGTGATGCTCAAGGAGG AGGTCGGCCCCGACGACATCGCCGAGGTGGTGTCCTCCTGGACCGGCATTCCGGTCGGCAGGCTGCTCGAGGGTGAGACC CAGAAGCTGCTGCGGATGGAGGACGAGCTGGGCCGTCGCGTGGTCGGACAGAAGGAGGCCGTGCAGGCGGTGTCGGACGC GGTGCGCCGGGCGCGGGCCGGAGTCGCCGACCCGAACCGGCCGACCGGCTCGTTCATGTTCGTCGGACCGACCGGCGTCG GCAAGACCGAGCTGGCCAAGGCGCTGGCCGACTTCCTGTTCGACGACGAGCGCGCGATGGTGCGTATCGACATGAGCGAG TACAGCGAGAAGCACGCGGTGGCTCGCCTGGTCGGCGCGCCTCCCGGCTACGTCGGCTACGACCAGGGCGGCCAGCTCAC CGAGGCGGTGCGGCGCAGGCCGTACACGGTGGTGCTGTTCGACGAGATCGAGAAGGCGCACCCGGACGTCTTCGACATCC TGCTGCAGGTGCTCGACGAGGGCAGGTTGACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACCATCCTCATCCTC ACCTCCAACCTGGGCGCGGGTGGTGACCAGGAGTTCGTCATGAACGCGGTGCGGGCCGCCTTCAAGCCGGAGTTCCTCAA CCGGCTCGACGACGTGGTCATGTTCCACGCGCTCGACGAGGAACAGCTCGAGCACATCGTCGACATCCAGCTCGAGCAGC TGCAGAAGCGCCTGGCGCAGCGGCGGCTCACCCTCGATGTCACCGGCTCGGCGCGGTTCTGGCTGGCGGTGCGCGGCTAC GACCCCGTCTACGGCGCGCGGCCACTGCGCAGGCTGATCCAGCAGGCCATCGGCGACACCCTCGCCAAGGAACTGTTGGC GGGCACCGTCACCGACGGCGACACCGTCAAGGTGGGTGTCAGCCCCGACGGCGACAACCTGGTCGTCGAACCGGCGTCCT GA Protein sequence : MDSFNPTTKTQAALTAALQAASAAGNPEIRPAHLLVALLDQTDGIAAPLLKAVGVDPATVRREAQDLVDRLPRATGATTQ PQLGREALAAITAAQRLATELGDEYVSTEHVLVGLADGDSDVTMLLKKYGATADALREAFTTVRGSARVTTPDPEATYQA LEKYSTDLTEAARTGKLDPVIGRDTEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRGKKVISL DLGAMVAGAKYRGEFEERLKAVLEDIKNSAGQIITFIDELHTIVGAGATGESAMDAGNMIKPMLARGELRLVGATTLEEY RQHIEKDAALERRFQQVLVGEPSVEDTVGILRGIKERYEVHHGVRITDSALVAAAALSDRYITSRFLPDKAIDLVDESAS RLRMEIDSRPVEIDEVERAVRRLEIEEVALSKETDEASKLRLEKLRQELADDREKLNQLMTRWQNEKSAIDQVRTLKEQL EALRGESERAERDGDLGKAAELRYGRIPSLEKQLAEAEKASGAAADGEVMLKEEVGPDDIAEVVSSWTGIPVGRLLEGET QKLLRMEDELGRRVVGQKEAVQAVSDAVRRARAGVADPNRPTGSFMFVGPTGVGKTELAKALADFLFDDERAMVRIDMSE YSEKHAVARLVGAPPGYVGYDQGGQLTEAVRRRPYTVVLFDEIEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTILIL TSNLGAGGDQEFVMNAVRAAFKPEFLNRLDDVVMFHALDEEQLEHIVDIQLEQLQKRLAQRRLTLDVTGSARFWLAVRGY DPVYGARPLRRLIQQAIGDTLAKELLAGTVTDGDTVKVGVSPDGDNLVVEPAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-94 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_121618.1 | Clp protease ATP-binding subunit | VFG2084 | Protein | 4e-106 | 42 |
