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Name : secD (PBPRB0500) Accession : YP_132173.1 Strain : Genome accession: NC_006371 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 581353 - 583188 bp Length : 1836 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : TTGTATGGCGACTTGAGAATGAAAAAACAAATTAAACAAAAACAAATTTTTAATCATTATTCGGCATGGAAGTATATCGT GCTGGTGGTGACGGTACTTGTGATGCTGCTGAGTGCGATTCCGACTTGGTATGGTGAAGATGCCGCTGTTCAGATTAGCG CTAAAAAAGCACCAGCCCCTTCTGTTTTGGCTATTCAACGTCAGTTAGAATCGAGTGGTATCACGGTAAAACGCATTGAT CAGCAAGCTGATAAAACAGTGGTCGTACTGGAAAATGACAACCAGCAAACGCAAGCTAAAAAAGTGTTATCCAATGTCGT GAAAGACAAATCAACACTAACGCTAGCGCTTGAACCTGCTGCGCCATTATGGCTACAAAATATGGGTTTCGAACCGATTA AACTTGGTCTTGATCTTCGTGGTGGTGTGCAGTTTTTGCTTGATGTAGATATTGACCAAGTTTACAAGGCGCAAGGTGCA AGCTTGGCGGATGAATTGCGTCAATTATTCCGTAAAGAGGGTATTCGAGGGGCACGTGTTGAGCAATCGGATGTTGACCA CCTAACGGTAAAGGTGAATAACTCTGAGGCAAACAGTGCTGTTCGTAAGTTTGTCAAAACACAATACCCACAATGGCAAG CAACCAATGGCGATGGTAACAGCGTTCGCTTAGCGATGAAAGATGCAGAAAAAACAGAGTTACGTAACTTAACCGTTCAG CAAAACTTACAAACAATGCGTAGTCGTATTGAAGAGTTAGGTATTACGGAAGCATTGGTGCAACGCCAAGGTGAAAACCG TATTCGTATCGAGCTACCTGGTGTGCAAGATCCTGCTGCAGCGAAGAATGTTATTGGCGCAACGGCAAGCTTGGCTTTTT ATGCTGTGAAAGAGCAGGGCACTGGCAGCACGATGGAGCTGAAAAACAAACAAGGCCAGCCTGTACGAGTAGGGCGCAAT CCTATCTTAGGTGGTGACCATATTGTTGATGCCCGTGCGAGCTTTGGCGAAATGGGTATGGCTGAAGTAAATATTACCCT CGATTCATCGGGTGGTAAAATCATGTCTGATTTCTCTCGTGATAACGTTGGTAAGCCAATGGCTACCTCATACAGCGAGT ACGGACGTGATAGTGAAGGCAAAACAACCCAAACCAATGAAATTATCAGTGTTGCAACCATTCAGTCTCAGCTTGGTATG CGCTTTCGTATAACAGGTACGGGGTCGATGGACGAAGCACAACAACTGGCGTTGTTATTGCGTGCGGGTTCATTAACTGC TCCTGTAACCATTGTTGAAGAACGCACTATTGGTCCTACATTAGGGGCTGAAAATATTGAAAATGGTTTTGCTGCGCTTG GTTTAGGCTTGGGCGTTACGTTGTTATTTATGGCTGTGTGGTATCGCCGTTTAGGCTGGGTTGCGAACGTAGCTTTGATT GCCAATATGATCATGTTATTTGGCTTATTGGCATTAATTCCTGGTGCTGTTCTAACCCTGCCGGGTATTGCAGGGTTAGT ACTTACTGTTGGTATGGCCGTTGATACAAATGTACTTATATTTGAACGAATTAAAGATAAGCTAAAAGAAGGGCGCAGTA TGGCTCAAGCGATTGATCGCGGCTTTAGTAGCGCTATCGGTACTATCTTTGATGCCAACTTCACCACTATGATCACTGCG GTTGTGTTATACGCCATTGGTAATGGTCCTATTCAGGGCTTTGCATTAACACTCGGTTTAGGTCTTTTAACCAGTATGTT CACTGGTATTTTTGCTTCTCGCGCCATCATTAATTTGGTGTGGGGTCGTGATTCTCGTCGTAATATAAGAGTGTAG Protein sequence : MYGDLRMKKQIKQKQIFNHYSAWKYIVLVVTVLVMLLSAIPTWYGEDAAVQISAKKAPAPSVLAIQRQLESSGITVKRID QQADKTVVVLENDNQQTQAKKVLSNVVKDKSTLTLALEPAAPLWLQNMGFEPIKLGLDLRGGVQFLLDVDIDQVYKAQGA SLADELRQLFRKEGIRGARVEQSDVDHLTVKVNNSEANSAVRKFVKTQYPQWQATNGDGNSVRLAMKDAEKTELRNLTVQ QNLQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMELKNKQGQPVRVGRN PILGGDHIVDARASFGEMGMAEVNITLDSSGGKIMSDFSRDNVGKPMATSYSEYGRDSEGKTTQTNEIISVATIQSQLGM RFRITGTGSMDEAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIENGFAALGLGLGVTLLFMAVWYRRLGWVANVALI ANMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSMAQAIDRGFSSAIGTIFDANFTTMITA VVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRRNIRV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-83 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-83 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-83 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-84 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-84 | 41 |
