Gene Information

Name : TTHA1487 (TTHA1487)
Accession : YP_144753.1
Strain : Thermus thermophilus HB8
Genome accession: NC_006461
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease ATP-binding subunit ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1412869 - 1415433 bp
Length : 2565 bp
Strand : -
Note : similar to DBJ:BAA81745.1 percent identity 99 in 854 aa

DNA sequence :
ATGAACCTGGAACGCTGGACCCAAGCCGCCCGCGAAGCCCTGGCCCAGGCGCAGGTCCTGGCGCAAAGGATGAAGCACCA
GGCCATAGACCTGCCCCACCTCTGGGCTGTCCTCCTGAAGGACGAGAGAAGCCTCGCCTGGCGCCTCTTGGAGAAGGCGG
GGGCCGACCCCAAGGCCCTTAAAGAGCTCCAGGAGCGGGAGCTTGCCCGCCTGCCCAAGGTGGAAGGGGCCGAGGTGGGC
CAGTACCTCACGAGCCGCCTCTCCGGGGCCTTGAACCGGGCCGAGGCCCTGATGGAGGAGCTCAAGGACCGCTACGTGGC
GGTGGACACCCTGGTCCTGGCCTTGGCGGAGGCCACGCCGGGGCTTCCGGGCCTGGAGGCCCTGAAGGGGGCGCTCAAGG
AACTGAGGGGAGGGAGAACCGTGCAGACGGAACACGCGGAAAGCACCTACAACGCTTTGGAGCAGTACGGCATTGACCTC
ACGCGGCTTGCCGCCGAGGGGAAGCTGGACCCCGTGATCGGCCGGGACGAGGAGATCCGGCGGGTGATCCAGATCCTCCT
CCGGCGCACCAAGAACAACCCGGTGCTCATCGGCGAGCCCGGCGTGGGGAAGACGGCCATCGTGGAGGGCCTGGCCCAGC
GCATCGTCAAGGGGGACGTGCCCGAAGGCCTCAAGGGCAAGCGGATCGTCTCCTTGCAGATGGGCTCCCTCCTCGCCGGG
GCCAAGTACCGGGGCGAGTTTGAGGAGCGCTTGAAGGCGGTGATCCAGGAGGTGGTCCAGTCCCAAGGGGAAGTCATCCT
CTTCATTGACGAGCTCCACACCGTGGTGGGGGCAGGCAAGGCCGAGGGCGCCGTGGACGCGGGCAACATGCTGAAGCCCG
CCCTGGCCCGGGGGGAGCTCAGGCTCATCGGGGCCACCACCCTGGACGAGTACCGGGAGATTGAGAAGGACCCCGCCCTG
GAGCGCCGCTTCCAGCCCGTGTACGTGGACGAGCCCACGGTGGAGGAGACCATCTCCATCCTCCGGGGCCTCAAGGAGAA
GTACGAGGTCCACCACGGGGTGCGCATCTCCGACAGCGCCATCATCGCCGCCGCCACCCTCTCCCACCGGTACATCACGG
AAAGGCGCCTTCCCGACAAGGCCATTGACCTCATTGACGAGGCGGCGGCCCGCCTGCGCATGGCCCTGGAGAGCGCTCCC
GAGGAGATTGACGCCCTGGAGCGCAAGAAGCTCCAGCTGGAGATTGAGCGGGAGGCCCTGAAGAAGGAGAAGGACCCGGA
CTCCCAGGAGCGCCTCAAGGCCATTGAGGCCGAGATCGCCAAGCTCACGGAGGAGATCGCCAAGCTCCGGGCCGAGTGGG
AGAGGGAGCGGGAGATCCTGAGGAAGCTCCGCGAGGCCCAGCACCGCCTGGACGAGGTCAGGCGGGAGATTGAGCTCGCC
GAGCGGCAGTACGACCTGAACCGGGCCGCCGAGCTCCGCTACGGGGAGCTTCCCAAGCTGGAGGCCGAGGTGGAGGCCCT
TTCGGAAAAGCTCCGGGGCGCCCGCTTCGTCCGCCTCGAGGTCACCGAGGAGGACATCGCCGAGATCGTCTCCCGCTGGA
CCGGGATCCCTGTGTCCAAGCTCCTGGAAGGGGAGAGGGAGAAGCTTTTGAGGCTTGAGGAGGAGCTCCACAAGCGGGTG
GTGGGGCAGGACGAGGCCATAAGGGCCGTGGCCGACGCCATCCGCCGGGCGAGGGCCGGCCTAAAGGACCCGAACCGGCC
CATCGGAAGCTTCCTCTTCCTCGGGCCCACGGGGGTGGGGAAGACGGAGCTCGCCAAGACCCTGGCCGCCACCCTCTTTG
ACACCGAGGAGGCCATGATCCGCATTGACATGACGGAGTACATGGAGAAGCACGCCGTCTCCCGCCTCATCGGGGCCCCG
CCCGGCTACGTGGGCTACGAGGAGGGGGGGCAGCTCACCGAGGCGGTGCGGAGGAGGCCCTACTCGGTCATCCTCTTTGA
CGAGATTGAGAAGGCCCACCCCGACGTCTTCAACATCCTCCTCCAGATCCTGGACGACGGCCGCCTCACCGACAGCCACG
GCCGCACCGTGGACTTCCGCAACACCGTCATCATCCTCACCTCCAACCTGGGGAGCCCCTTGATCCTCGAGGGCCTCCAG
AAGGGCTGGCCCTACGAGAGGATCCGGGACGAGGTCTTTAAGGTCTTGCAGCAGCACTTCCGCCCCGAGTTCCTGAACCG
CCTGGACGAGATCGTGGTCTTCCGGCCCCTCACCAAGGAGCAGATCCGCCAGATCGTGGAGATCCAGCTCTCCTACCTCC
GGGCCCGCCTCGCCGAGAAGCGCATCTCCCTGGAGCTCACCGAGGCCGCCAAGGACTTCCTGGCGGAAAGGGGCTACGAC
CCCGTCTTCGGGGCAAGGCCCTTGCGGCGGGTCATCCAGCGGGAGCTGGAGACGCCCCTCGCCCAGAAGATCCTGGCCGG
CGAGGTCAAGGAGGGGGACCGCGTGCAGGTGGACGTGGGGCCCGCGGGCCTCGTGTTTGCCGTCCCCGCCCGGGTGGAGG
CCTGA

Protein sequence :
MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG
QYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDL
TRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG
AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPAL
ERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAP
EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA
ERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRV
VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP
PGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQ
KGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYD
PVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPARVEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 4e-97 44
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 5e-99 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 4e-99 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TTHA1487 YP_144753.1 ATP-dependent Clp protease ATP-binding subunit ClpB VFG2076 Protein 3e-105 43
TTHA1487 YP_144753.1 ATP-dependent Clp protease ATP-binding subunit ClpB VFG2084 Protein 7e-98 41