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Name : iroC (SPA2630) Accession : YP_151807.1 Strain : Salmonella enterica ATCC 9150 Genome accession: NC_006511 Putative virulence/resistance : Virulence Product : ABC transporter Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 2733395 - 2737051 bp Length : 3657 bp Strand : + Note : similar to Salmonella typhi CT18 putative ABC transporter protein DNA sequence : ATGCCCGCGACCCATTCCCCCATGCCCGCTCGTGCCTGGATAGTTCGCCTTGCCCGCGTGTGTTGGGAACGAAAAACACT GAGCATCATTGTCATCGTAGCATCAGTATCGACCATTTTACTGGCTGCGCTGACGCCGCTAATAACGCGTCAGGCCGTCA ATGACGCGATAGCAGGCGATACGCCCCACCTGCCGTTACTTGCCTGCGGCCTGCTGTTAATTGCCCTTTTTGATTTTATC GGGAATTACGTGCGCCGCGGCTATGCCGGAGAACTCTCGTTGTGGGTTCAGCATACGTTACGTAGCCGTGCGTTCGACAG TATTCAAAAACTGGACGGCGCAGGCCAGGACGCCTTGCGTACCGGGCAGGTCATTTCGCGTACCAACAGCGATCTTCAGC AGGTACACACCTTGCTACAGATGTGTCCGGTGCCGCTGGCGGTGCTCACTTACTATGTGGCCGGCATCGCGGTAATGCTA TGGATGTCGCCATCCATGACGCTTATCGTGATTTGCGTACTGGCCGCCCTTGCCATTACCGCCCTGCGCGCCCGTCGCCG TGTTTTCGCGCAAACGGGACTTGCCTCAGACCGGCTGGCGCACATGACGGAACATATGCGCGAAGTATTGGAACAGATCT CAGTGGTGAAGTCCTGCGTGGCGGAGTTGCGCGAAACGCGTTGGCTAGATGGTCAGTCGCGGCAGATGGTGCGGGTACGC ATCGGCGCCGCTATCTCGCAGGCGATGCCGGGCGCAACCATGCTGGCGCTACCGGTGATAGGGCAAATCGTCCTGCTGTG CTATGGCGGCTGGTCGGTGATGAACGGGCGCATCGATCTGGGAACCTTCGTTGCGTTCGCGAGTTTTCTCGCTATGTTGA CCGGCCCCACCCGCGTACTGGCATCGTTTTTGGTTATCGCACAGCGCACACAGGCGTCGGTGGAGCGCGTCTTCGCGCTT ATCGACACGCGTTCTCGCATGGAAGACGGTACTGAGTCGGTTGAAGGTCAGATTATCGGGCTGGACGTGGAGAAGATGAG TTTCCACTACGACAACGGTAACCGTATCCTCACTGAGATCTCGTTTTCCATTCACGCCGGTGAAACCGTGGCGGTGGTTG GCGCATCCGGCTCCGGAAAATCAACATTGCTGATGTTGCTGGCGCGCTTTTACGATCCCACCTCCGGCGGAGTATGGCTC AACACCACTACGGGTCAACAGAATATTCGCGACCTGAAACTGACGGCGCTTCGTCGTCGCGTTGGCGTAGTGTTTGAAGA CGCGTTTCTGTTTGCCGGTACGGTGGCGGAAAACATCGCCTATGGGCACCCGCAAGCGACTCAGGACGACATTCGACGCG CCGCCGATGCCGCAGGCGCCAGCGGGTTCATCAATGCGCTACCGCAGGGGTTCAACACCCGACTGACCGAACGCGGAAGC AACCTCTCCGGCGGCCAACGCCAGCGTATTGCGCTAGCCCGAGCATTGATTACCGCGCCGGAACTGCTGATTCTCGATGA CACCACCTCGGCGGTCGATGCCGGTACTGAAGCGGAAATTAACACGGCTCTTGGTCGTTATGCCGATAATGAGCATATGC TGCTGGTGATTGCACGCCGCCGTTCAACACTGCAGTTAGCCGATCGGATCGTCGTGCTGGATAAAGGCCGCGTCGTGGAT ATCGGTACCCAGGCGGAGCTGGATGCAAGGTGTTCGACGTTTCGCTCGCTGATGAGCGGCGAGGGGGATTTTCTCGCCCT TGCCCCGGCAGAACAACGTACGCTATGGCCAACAACGCAGGCGGTAAAATCCGACGACGCGCATGAGCGCCAGACACCCG CCGGAAAAGGTTTTGTCGACCGGATGACGCGCGTTCCGGAACGCGCCGTACAGATGGCGCTGGCAGGCCACGGGCGTCAA GTCTCATCGCTGCTGACGCCAGTAGCCTGGATGTTCGTCATCGCCGCCCTGCTTATCGCGCTTGATTCCGCCGCAGGCGT TGGCGTGCTGGTGCTTTTGCAGCGCGGTATTGACTCAGGCGTTGCCGCAGGGGATATGTCGACTATTGGCATATGCGCCC TGCTCGCGCTGTGCCTGGTGGCGATCGGTTGGTGCTGCTATGCGCTGCAAACGATCTTCGCCGCCCGCGCGGCAGAGTCG GTACAGCATACGGTACGCTTACGCAGCTTCAGCCACCTGCTACGCCTGAGTCTTCCCTGGCACGAGAAGCACATCGACTC GCGTCTTACTCGCATGACCGTCGACGTTGATTCACTCGCCCGATTTCTGCAAAACGGTCTTGCCAGCGCGGCCACCAGCA TCGTGACGATGGTCGCTATCGCCGCGGCAATGTTCTGGCTTGACCCCATTCTTGCGTTAACGGCATTAAGCGCCGTACCT GTAGTGATACTGGCGACGTGGATTTACCGCCGTTTGAGCTCGCCTGCCTACGCCCAGGCACGGCTGGAAATTGGTAAGGT GAACAGTACGCTTCAGGAAAAGGTCTCCGGTATGCGGGTAGTTCAGTCACACGGCCAACAGAAGCAGGAAGCCGCCAGGC TACGGGCGTTATCAGACAACTTCCGCGCCACCCGCGTGCGGGCGCAAAAATACCTTGCTGTCTATTTTCCGTTCCTGACC TTCTGCACCGAGGCCGCCTATGCCGCCGTGCTTTTAATCGGAGCGACCCGGGTCGCCGAAGGCGAAATGACGCCCGGGAT ACTGGCGGCGTTCTTCCTGCTATTGGGACAATTTTATGGCCCGGTACAGCAGTTGTCAGGCATTGTCGATTCCTGGCAGC AGGCGACCGCCAGCGGCAAACATATCAATGCGCTATTGGCGACTGAGGAAACGGAGAATATTGAACCGTCCTCCATAACG CCTGGCACTGGCGGCGCGCTACGTCTGGAGGCATTGACATTCCGCTATCCCGAAAAAACGCAACCTGTGCTTGATAAGCT CTCGCTCACCATTCCGCCAGGAACGGTAGTCGCGGTGGTCGGACGTAGCGGCACCGGCAAATCGACGCTGATCAAGCTGC TGGCCGGGCTCTACTCTCCCGGCAGCGGGCAAATCCGTGTCGGTGAGCGCCTAATTGATGCCGCGTCGCTTAGTGATTAT CGTCGCCAGACGGGGCTGGTCACTCAGGATGTCGCATTATTTAGCGGCGATATTGCCGAAAATATCCGCTATTCGCGGCC AGACAGCAGCGACACGGAGGTGGAGATCGCGGCGCGACAGGCGGGACTCTTTGAAACTGTGCAACATCTGCCGCTGGGGT TTCGTACTCCGGTCAATAACGGCGGCACGGATCTGTCCGCGGGCCAGCGTCAGTTGATTGCCCTCGCCCGCGCCCACCTG GCGCAGGCGCATATTCTGCTGCTCGACGAGGCGACAGCGCGTATCGACCGTAGCGCCGAGGAGCGCTTAATGACCTCGCT TACCAGGGTGACGCATACCGAGAAACGTATCGCGCTTATCGTCGCGCACCGGCTGACCACCGCTCGCCGTTGCGATGTTA TTGTCGTAATCGATAAAGGATGTATCGCTGAATATGGCAGCCATGAGCAGTTGATAGCGACTCATGGCCTGTATGCTCGT CTGTGGCGGGACAGCGTCGGCCAGACACGCGATACGCAAGAAGAGGTCATGGGATAG Protein sequence : MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALTPLITRQAVNDAIAGDTPHLPLLACGLLLIALFDFI GNYVRRGYAGELSLWVQHTLRSRAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVML WMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKSCVAELRETRWLDGQSRQMVRVR IGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNGRIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFAL IDTRSRMEDGTESVEGQIIGLDVEKMSFHYDNGNRILTEISFSIHAGETVAVVGASGSGKSTLLMLLARFYDPTSGGVWL NTTTGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDDIRRAADAAGASGFINALPQGFNTRLTERGS NLSGGQRQRIALARALITAPELLILDDTTSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVD IGTQAELDARCSTFRSLMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTPAGKGFVDRMTRVPERAVQMALAGHGRQ VSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVAAGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAES VQHTVRLRSFSHLLRLSLPWHEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSAVP VVILATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQKQEAARLRALSDNFRATRVRAQKYLAVYFPFLT FCTEAAYAAVLLIGATRVAEGEMTPGILAAFFLLLGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSIT PGTGGALRLEALTFRYPEKTQPVLDKLSLTIPPGTVVAVVGRSGTGKSTLIKLLAGLYSPGSGQIRVGERLIDAASLSDY RRQTGLVTQDVALFSGDIAENIRYSRPDSSDTEVEIAARQAGLFETVQHLPLGFRTPVNNGGTDLSAGQRQLIALARAHL AQAHILLLDEATARIDRSAEERLMTSLTRVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIATHGLYAR LWRDSVGQTRDTQEEVMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| iroC | CAC43427.2 | ABC transport protein | Virulence | PAI III 536 | Protein | 0.0 | 80 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| iroC | YP_151807.1 | ABC transporter | VFG1653 | Protein | 0.0 | 80 |
