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Name : secD (IL2148) Accession : YP_156529.1 Strain : Idiomarina loihiensis L2TR Genome accession: NC_006512 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2284049 - 2285893 bp Length : 1845 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCGTTGTGGAAAAACCTGCTGGTTATTTTGGTCGTATTGGTGGCAGCGCTTTATGCGCTGCCAAA CATTTACGGCGAAGATCCAGCAGTTCAAATTTCCGCAAACCGAAATGCGACCATCGATACCAGCACCATGGATCGCGTAA AGAGCAGCCTGGAAAACGTTGGCATACAAGCTAAAAGTATAGCTTTAGAAGAAGAGCAGCTTTTAGTTCGACTGAATTCC GATGATGAGCAGTTAAAAGCCCGGGAAAGTATCCTGGAGAGTTTAGGTGATAACTACATAGTCGCTCTGAACCTTGCTCC CGCAACTCCTGAGTGGTTGAAGAGTGTTGGTGCTCAGCCAATGAAACTGGGGCTGGATTTACGTGGCGGTGTACACTTCT TGATGGAAATCGACATGGACGAAGCCGTTCGTAAAATTGTCGATGGTATGAAGGACACGATTCGTGCCGAACTGCGTGAA GAACGTATTCGTTACAGCGCTGTTCGTGTTAATGACACGACGGTTGAAATTGAGCTTCGTAATGAAGAAGCTTATGCAGA AGCTGCCAACTATCTGGATGGTCGTTATCAGGGGTATACGCTTCTGGAAGACGATGAAAACCAACTGCTGCAACTACAGA TGAGCGAGCAGAAGCTTGCTGAAACACGCGATTACGCGGTATCTCAAAATATTACCATTATGCGTAACCGGGTTAACGAA TTAGGTGTTGCCGAGCCGGTTATCCAGCGTCAGGGCTCAAACCGCATTGTGGTGGAATTACCTGGTGTGCAGGATACAGC AAGAGCGAAAGAGATTTTAGGGGCTACAGCAACGCTGGAGTTCCGTATGGTTGATTCCGAGAACGATGTGCGCGACGCCC AGAACGGTCGGGTACCTTTTGGTAGCGAGTTAATGCCAATGCGCGACGGTCCAGCTCAATTGCTGAAAGAAGACGTTATT CTGACTGGTGACCATATTGTTAACGCAGGTGTTGGTTACGACGAATACAACCGCCCGCAGGTTAATATTACCCTGGATGG TGCTGGTGGTAACAAGATGTCGTTAGCAACTAAAGACAATGTTGGTCAGCCGATGGCAACGGTCTTTATTGAATATAAAG CAACAGATGAGCGCGACGCAGAAGGTAACTTACAGTTCACTAAAAATGCCGAAGTGATTAACGTTGCGACTATTCAATCG CGGTTGGGGAGTAACTTCCGTATTACTGGTGTGGGCGCAAACGAAGCTCAAAATTTGGCGTTACTATTACGCGCTGGCGC ATTGATTGCCCCTATTCAAATTGTCGAAGAACGTACCGTCGGGCCAAGCTTAGGTCAGCAGAACATTGATGCTGGTACTC AGGCTATTTTTTGGGGCTTTGTTTTAGTTCTTGCCTTCATGTTGTTGTACTACAAAAAGTTTGGTCTGGTTGCCAACTGT GCTCTGGCAGCAAACCTGGTGCTTATTATTGGCGTGATGTCGATGATTCCGGGAGCAACGCTGACCTTACCGGGTATGGC CGGTATTGTACTGACAGTTGGTATGGCAGTAGATGCTAATGTGCTTATTTTCGAGCGCATACGCGAAGAAATAAAAGCCA AACGAAGCCCTCAACAGGCAATTCATCACGGCTATGACAGTGCCTTGTCGACCATTGCCGATGCGAACGTAACCACGCTG ATTGCGGCGCTTATCTTGTTTGCTATTGGTAATGGCCCTATTAAAGGCTTTGCTATCACTCTTGCTATCGGGATTATAAC GTCCATGTTTACTGCGATAGTCGGAACCCGTGCCATTGTTAACTCAGTTTGGGGCGGCAAAAAGCTGTCTAAACTGTCTA TTTAG Protein sequence : MLNKYPLWKNLLVILVVLVAALYALPNIYGEDPAVQISANRNATIDTSTMDRVKSSLENVGIQAKSIALEEEQLLVRLNS DDEQLKARESILESLGDNYIVALNLAPATPEWLKSVGAQPMKLGLDLRGGVHFLMEIDMDEAVRKIVDGMKDTIRAELRE ERIRYSAVRVNDTTVEIELRNEEAYAEAANYLDGRYQGYTLLEDDENQLLQLQMSEQKLAETRDYAVSQNITIMRNRVNE LGVAEPVIQRQGSNRIVVELPGVQDTARAKEILGATATLEFRMVDSENDVRDAQNGRVPFGSELMPMRDGPAQLLKEDVI LTGDHIVNAGVGYDEYNRPQVNITLDGAGGNKMSLATKDNVGQPMATVFIEYKATDERDAEGNLQFTKNAEVINVATIQS RLGSNFRITGVGANEAQNLALLLRAGALIAPIQIVEERTVGPSLGQQNIDAGTQAIFWGFVLVLAFMLLYYKKFGLVANC ALAANLVLIIGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIKAKRSPQQAIHHGYDSALSTIADANVTTL IAALILFAIGNGPIKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKKLSKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-118 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-118 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-118 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-118 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-118 | 48 |
