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Name : secD (XOO2482) Accession : YP_201121.1 Strain : Xanthomonas oryzae KACC10331 Genome accession: NC_006834 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2631342 - 2633186 bp Length : 1845 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTCGAATTTCCTCGCTGGAAGTACTTCCTGATCCTGCTGGTGCTGGCGGTCAGTGCGCTGTATGCGCTGCCCAACAT CTATCAGAAGGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCTCAGCTCGACGACGCCTTGCGCAGTCGCATCGACG CCGACCTCAAGGCTGCCGGCATCACGCCCAAGGCAGTCACCAAGGAAGGCGACAGTCTGATGGTGCGCCTGCCCTCGCTG CAGGCGCAGACCCGCGCCAACGACGTATTGCGTCAGCAGCTGGGCGAAAACTACACCGTGGCGCTGAACCTGGCCTCCAC CGTACCGGACTGGCTGGCCAAGCTGGGCGGCCGGCCGATGGTGCTGGGTCTGGACCTGGTGGGCGGCGTGCACTTCGCCA TGCAGGTCGATCAGAAGGCCGCGCTGGAAAAGCGTCTGGACGGTTTCGCCGAAGACATCCGCACCACCTTGCGCGATGCC CGCATCGCCTATCGCTCGGTGGAGCGTCGCGCGGATAACAGCATCCAGGTCAGCCTGGGCGAGGGTGCCGACGCCGATGC CGCGCGCGTGACGCTGGCCAAGGCGCAGCCGACCCTGACCTACGACGTCAGCGGCCAGAACATCGCGGTCAAGGTGCCGG AGGCCGAGCTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTGCGTAACCGCGTCAATGCACTGGGC GTGTCCGAGCCGACCATCCAGCGCCAGGGCGAAGACCGCATCGTGGTCGAACTGCCGGGCTTGCAGGACACCGCCGAAGC CAAGCGCCTGATCGGTGCCACCGCGTCGCTGGAATTCCGCGCCGTGGTCGACGGTAACGCCGAAGATGCAGTGCGCAGCG GCAACATCCCGCCGGAGGCCAAGGTCTATCGCGTGCGCGATACCGGCGCGCCGGTGCTGCTCAACAAGCGCGCGTTGGTG ACCGGCGACCAGATGGTCAGCGCATCGGTCAGCAACGACCAGAACGGCATGCCGGCGGTTGCGGTGACGCTCAACAACGT CGCCGGCCAGCGCATGTTCGACTACACCAGCGCCAACGTCGGCAAGCTGATGTCGGTGGTCTATATCGAGCGCATTCCCA CCGTGACCATGGTCGATGGCAAGGAAGTGCGTAGCGTGCGGGTGAAGGAAGAAGCGTTGCCTGCTACACGCATCGCTGGT GTGTTTGGCAAGAACTTCCAGACCACCGGTTTGGAAAAGACCGAAGCCGAAAATCTGGCCAAGCTGCTGAAATCCGGCTC GCTGGCCGCGCCGATGGATTTCGTCGAGGAATACGTCATCGGCCCGAGCCTGGGTGCGGAGAACGTGGAGCGCGGCGTCA CCGCGGTGGTCTACTCGTTCCTGTTCACGCTGGTGTTCTTCACCATCTACTACCGCGTGTTCGGTGCTATCACCTCGGTG GCGCTGCTGTTCAACCTGTTGATCGTGGTGGCGGTGATGTCGCTGTTCGGTGCCACCATGACGTTGCCGGGTTTTGCCGG CCTTGCCCTGTCGGTGGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTATTCGTGAAGAGTTGCGCCTGGGCG TGCCGCCCAAATCGGCGATTGCGGCCGGTTATGAAAAGGCCGGCGGTACCATTCTCGACGCCAACCTCACCGGCCTGATC GTGGCGGTGGCCCTGTATGCGTTCGGCACCGGCCCGCTCAAGGGCTTCGCGCTGACCATGATGATCGGTATTTTCGCCTC GATGTTCACTGCGATCACGGTCTCGCGTGCGCTGGCGGTGTTGATCTACGGCAGCCGCAAGAAGCTGAAGTCTGTCGCTA TTTAA Protein sequence : MLEFPRWKYFLILLVLAVSALYALPNIYQKDPSVQITASRGAQLDDALRSRIDADLKAAGITPKAVTKEGDSLMVRLPSL QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA RIAYRSVERRADNSIQVSLGEGADADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALV TGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAG VFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLI VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 7e-108 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-108 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-108 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-108 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-107 | 45 |
