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Name : secD (VF_0875) Accession : YP_204258.1 Strain : Genome accession: NC_006840 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 959369 - 961192 bp Length : 1824 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCAAAGAAAACAACCAATACAGCGACTGAACCATTATTCTAAATGGAAATACATCGTACTTATTACGACCCTTGTTAT TCTATTATTGAGTGCGATCCCGACTTGGTATGGTGAAGATGCCGCCGTGCAAATCACCAACAAAGATGGACACATTCCAT CGATTGTATCACTACAAAACACCTTGACTGAGCAAGGCATTAACGTAAAACGCATCGAACAAAAAGGCGATAAAACCATC GTTATTTTGAAAGATGAAGCACAACAAGTTGCCGCTAAAGATGTGCTTGGTTCAGTGATTGATGAAAGCCAAAAAGGCAC CACACTAGCATTGTCACTTGCACCTGCTGCACCAGCTTGGCTACAAAACATGGGCTTTGAACCAATCAAACTCGGTCTTG ATTTACGTGGCGGTGTGCAATTCTTACTGGATGTGGACGTAAACCAAGTTTACCAAGCACAACGTAACGAATTAGCTGAC TCGCTAAAACAAGAGTTACGTGAAGAACGTATTCGCTCAGTTCGCTTACAAAAAGTAGACAGTGATACGCTAGTGGTTCA CTTACCTTCAGAAGAAGCAAGCCACGCAGCTCGTCAATTCATTCATAAAAACTACCCTACTTGGCAAATCACCAATGATG ACGGTTTTGATCTTAAATTAACGCTAAAAGAAGATGAAAAAATTGCCGTACGTAACCTAACAGTACAGCAAAACCTTCAA ACCATGCGTAGCCGTATTGAAGAGTTAGGTATTACCGAAGCACTGGTTCAGCGTCAAGGTGAAAACCGCATTCGTATCGA GCTTCCAGGTGTTCAAGATCCAGCAGCGGCGAAAAACGTTATCGGTGCGACAGCAAGTCTTGCTTTCTACGCAGTAAAAG AACAAGGCACTGGCAGCACAATGGTTATTCCTGACCAAAACGGCCAACCAGTTCGTGTAGGCAGAAAACCAGTACTAACG GGTGATCACATTGTTGATGCACGTGCGAGTCTTGGTGAAATGGGCATGGCAGAAGTAAACATTGTTCTTGATAGTTCAGG CGGCAAAATCATGTCTGAGTTTTCTCGTCACAATGTGGGCAAGCCAATGGCAACCTCATACAACGAATACAGCCGTGATA GCGCAGGTAACACAGAGCAAAGTAACCAAATCATCAGTGTTGCGACGATTCAAAGTCAGTTAGGTAGCCGCTTTAGAATC ACAGGTTCTGGTTCTCTTCAAGAATCTCAAGAGCTTGCTCTACTTCTACGTGCTGGTTCATTAACTGCGCCTGTAACCAT CGTTGAAGAACGTACTATTGGTCCAACGCTAGGTGCTGAAAACATCCAAAACGGTTTTGCGGCTTTAGGTCTTGGTCTTG GTTTAACGCTGCTATTTATGGCGGTGTGGTACCGTCGCTTAGGCTGGGTTGCCAACATTGCACTTATTGGCAACATGGTA ATGCTATTTGGTCTGCTTGCTCTTATTCCGGGTGCTGTTCTTACGCTTCCGGGGATTGCAGGTCTTGTACTGACCGTAGG TATGGCGGTTGATACCAACGTACTGATATTTGAACGTATTAAAGATAAACAGAAAGAAGGTCGAACATTGGCTCAAGCCA TTGATAGAGGTTTTAGTAGTGCATTTGGTACCATTTTTGATGCCAACTTCACCACCATGATTACCGCAGTGGTTCTATAC ACCATAGGTAATGGCCCTATCCAAGGCTTTGCATTAACACTGGGCTTAGGTCTATTAACCAGTATGTTCACCGGCATCTT CGCTTCACGTGCCATTATCAATTTAGTTTGGGGTCGTGATTCTCGTCATGATGTTAGGGTTTAA Protein sequence : MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQNTLTEQGINVKRIEQKGDKTI VILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAWLQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELAD SLKQELREERIRSVRLQKVDSDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMVIPDQNGQPVRVGRKPVLT GDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRI TGSGSLQESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLY TIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVRV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-83 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-83 | 42 |
